Oncorhynchus keta (chum salmon): 118381277
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Entry
118381277 CDS
T09424
Name
(RefSeq) LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DDX41
KO
K13116
ATP-dependent RNA helicase DDX41 [EC:
5.6.2.7
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
118381277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oke03041
]
118381277
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
118381277
Spliceosome [BR:
oke03041
]
Complex C
Other components
Complex C specific factors
118381277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
zf-CCHC
Helicase_C_2
Motif
Other DBs
NCBI-GeneID:
118381277
NCBI-ProteinID:
XP_052373964
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All DBs
Position
4:complement(85180773..85308726)
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AA seq
616 aa
AA seq
DB search
METEHRTKKRSYGEEEKSGSEHPSEEDDYVPYVPVKIRKHQMQQKMLRLRGKVVEEEQKD
SGGEQRDEDEGLGPRSNVSLLDQHQVLKEKAEARKESAKEKQLKEEQKILQSVAEGRALM
SVKEMAKGIIYDDPIKTSWLAPRYILNMPPARHDRVRKKYHILVDGDGIPPPIKSFREMK
FPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFSLEQE
KKLPFCKSEGPYGLIICPSRELAKQTHTIIEYYCKLLEEEGAPHMRSVLCIGGMSVKDQM
EVVKHGVHMMVATPGRLMDLLQKKMISLDICRYLALDEADRMIDMGFEEDIRTIFSYFKG
QRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLLEC
LQKTPPPVLMFAEKKADVDAIHEYLLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVL
VATDVASKGLDFPAIQHVVNYDMPEEIENYVHRIGRTGRSGKTGIATTFINKGCDESVLM
DLKALLIEAKQKVPPVLQVLQTGDETMLDIGGERGCTFCGGLGHRITDCPKLEAMQTKQV
TNIGRKDYLAHSSMDF
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggagacagaacaccggactaaaaagagatcctatggggaggaggagaagtccggatca
gagcatccatctgaagaggatgactatgtcccatacgtacctgtcaaaatcagaaagcat
caaatgcaacagaagatgctgcgtctgcgagggaaggtggtagaggaggagcagaaggat
agtggaggagagcagagagatgaggacgagggtctgggaccacgctctaacgtctccctg
ctggatcaacaccaggttctcaaggaaaaggccgaagctcgtaaagagtcagccaaggag
aagcagctgaaagaagaacagaagattctgcagagtgtggcagagggaagagctctcatg
tcggtgaaggaaatggccaaaggtatcatctatgacgatcccatcaaaacaagttggttg
gctccacggtacatcctgaacatgcccccagcgagacacgaccgcgtcaggaagaagtac
cacatcctggtcgacggtgacggtatccctccgccgatcaagagcttcagggagatgaag
ttcccacaggccatcttgaaaggtctgaaaaagaaggggattgttcaccctacacccatt
caaatccagggaattccaaccattctctcaggccgggatatgatcggtatcgccttcaca
ggttcagggaagactctggtgttcaccctccccatcatcatgttctctctggagcaagag
aagaaactgcccttctgtaagagtgaagggccctacggtctcatcatctgtccctcaaga
gagttggctaaacagacccacaccatcatagaatactactgtaagctgctggaggaagaa
ggggctccacatatgagatcagtcctctgtataggaggcatgtctgtcaaagaccagatg
gaggtggtcaaacatggtgtccacatgatggtggcgacccccggccgactgatggacctg
ttgcagaagaagatgatcagtctggacatctgtcgttatctggctctagacgaggctgac
cgaatgatagacatgggcttcgaagaagacatcagaactatcttctcctactttaagggc
cagagacaaactcttctgttcagtgccaccatgcctaagaagatccagaactttgccaag
agtgccctggtcaaacccatcaccatcaacgtgggccgggccggcgctgccagcctggac
gtcattcaggaagtggagtatgtgaaggaagaggctaagatggtttacctgctggagtgt
ctacagaagacccctcctccggtgttgatgtttgctgagaagaaagcagacgtggacgcc
attcatgaatatctcctcctgctaaaaggagtggaggctgtggctatccacggaggaaaa
gaccaggaggagcgtaccaaagccatcgaggcttttaaggaagggaagaaggatgtgttg
gtggctactgatgtcgcgtctaaaggtctggacttccctgctatacagcacgtggtcaac
tatgatatgccagaggagatagagaactatgtccacaggattggtcgaaccggtcgatca
gggaagactgggatcgccaccactttcatcaacaaaggctgtgatgagtcggtgctgatg
gatctgaaggccctgctgatagaagccaagcaaaaggttccccctgttctacaggtccta
cagacaggagacgagaccatgctggatatcggaggagagagaggctgtacattctgcggt
ggtctaggtcatcgtatcacagactgtcccaaactggaagccatgcagaccaaacaggtc
accaatatcggacggaaagactacctggcacacagctccatggacttctga
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