Oncorhynchus keta (chum salmon): 118396216
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Entry
118396216 CDS
T09424
Name
(RefSeq) transcription factor SOX-6-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
oke
Oncorhynchus keta (chum salmon)
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oke03000
]
118396216
Transcription factors [BR:
oke03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
118396216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
118396216
NCBI-ProteinID:
XP_052321401
EnsemblRapid:
ENSOKEG00005043573
LinkDB
All DBs
Position
17:10868982..11034707
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AA seq
798 aa
AA seq
DB search
MLPDTCYCGTPATVGHLLLWDTVGHLLLWDTCYCGTPATVGHLLLMMSSKRATPPFPPAT
EEEEAIGQDSVGWANEDRESHDQPVMPPLHGKPLPEEHQPIRDSKPESDWESIGPTQTDN
ASSKGCFLNSYRNNSISPPKPEECSQDCGELLGGSAFRTPERRKGSLADVVDTLKQKKLV
ELTKTEQDESTCAETLLSRDWKDRRDRLNASEVLGEVKGTPESLEEKERQLSTMIGQLIS
LREQLLAAHDEQKKMAVSQMEKQRQQMELARQQQDQITTQQQQLLQQQHKINVLQQQIHV
QGHMPPLMIPVFPHDQRSMAAAAAQQGFLFPPNMSYKPGDNYPMQFIPSTMAAAAASGLS
PLHQQLYAAQLASMQISPGAKMASLPQPQNSSGPLSPSALKSKKRASSPVTHIKEEGSTQ
PLNLSARPKTGEPHHSPSSPSHSLYPGNKSRPISVGKRRIPSPLSNMGRGSLDILSSLNP
TPLFGDQDAVMSAIQEARKMREQIQREQLHHQQQSLEAKLTALSGMGFSNGSKERMHFES
LSQHLGNLGEDDGKTGHIDLTRHEDVDGVSCTTEARVFRETRGRNSTEPHIKRPMNAFMV
WAKDERRKILQTFPDMHNSNISKILGSRWKSMTNQEKQPYYEEQAHLSKIHLEKYPNYKY
KPRPKRTCIIDGKKLRIGEYKQMMRSRRQEMRQFFSVGPQPQIPISNSAGGLYPAAIPIA
TATPSPHLTSDCSSASASPEPAIPATQSTFGVVKPKPVAMVTGDHPVIGEDEIDMYEDFE
DKSDYSSGHETREPVGAN
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atgcttccagacacctgctactgtgggacacctgctactgtgggacacctgctactgtgg
gatactgtgggacacctgctactgtgggacacctgctactgtgggacacctgctactgtg
ggacacctgctactaatgatgtcgtccaagcgagccacacctccatttcccccggcgaca
gaggaagaggaagcgataggtcaggacagtgtgggctgggccaatgaggacagagaaagc
catgaccagccagttatgccccctctgcatggcaaacccctcccagaggagcaccagcca
atcagagacagcaagcctgagtcggactgggagagtataggccctactcagacagacaat
gctagtagcaagggctgtttcttgaactcctaccggaataactctatatctccaccaaag
cctgaggagtgttcccaggattgcggcgagctgctaggcggatccgccttcagaacaccg
gaacgccgcaaaggaagcctggccgacgtggtggacacactgaaacagaagaaactagta
gagctgacaaagacagaacaggatgagtctacctgtgcggagacacttctgtccagggac
tggaaagacaggagggacagactgaatgccagcgaggtcctaggagaggtcaaaggtacc
ccagagagtttggaggagaaggagcgtcagctttcgaccatgattggccagctcatcagc
ctgcgggagcagctcctggcggcccacgacgagcagaaaaagatggccgtctcacagatg
gagaagcagaggcagcaaatggagctggcccgtcagcagcaggaccagattacgacgcag
cagcagcagctcctgcagcagcagcataagatcaacgttctccaacagcagatacacgtg
cagggtcacatgcctcctctgatgatcccagtgtttcctcacgaccagcgatctatggcg
gctgctgccgcacagcagggcttcctcttcccaccgaacatgtcctacaagccaggtgat
aactaccccatgcagttcattccatccacaatggcagctgcagccgcttcaggactgagc
ccgctccatcagcagctgtacgctgcccagctggccagcatgcagatctcgcccggagcc
aaaatggcctccctgccgcagcctcaaaactcctcaggccccctctcgccctctgccttg
aagagtaagaagagagcatcgagtcctgtcactcacattaaggaggaaggatcgacacag
cccctgaatctctcagcccgacccaagactggcgagccccaccactccccatcctcgccg
tcacacagcctgtaccctggcaacaagagcaggcccatcagcgtggggaagaggcgcatc
cccagccccctctccaacatgggcaggggctcacttgacatcctgtctagcctgaacccc
acgccactgtttggggaccaggatgcggtgatgagcgccatccaggaggcgaggaagatg
agggagcagatccagagagaacagcttcatcaccagcagcaaagcctggaggccaagctc
acggccctgagcggcatgggtttcagcaatggcagcaaggagcggatgcactttgagagt
ttgagtcagcacctgggcaacctgggagaggatgatggaaagacgggccacattgacctc
accagacatgaggatgttgatggtgtctcctgcactacagaggcccgggtcttcagggag
accaggggcaggaacagtactgagccccacattaagagacccatgaatgccttcatggtg
tgggccaaggacgagaggaggaagatcctgcagaccttccccgacatgcacaattccaac
atcagcaagatcctgggctctcgctggaagtccatgaccaaccaggagaagcagccatac
tacgaggaacaggctcatctcagtaagatccacctggagaagtaccccaactacaagtac
aagccccggcccaagaggacctgcatcatcgacggcaagaagctacgcatcggggagtac
aagcagatgatgcgctcgcggcgtcaggagatgaggcagttcttcagtgtggggccacag
cctcagatccccatcagcaacagtgccggcggcctctacccggctgccatccccatagcg
acagccacgccctcaccgcacctgacgtcggactgctccagcgcctcggccagccccgag
cccgccatccccgccacccagagcacgttcggcgtggtcaagcccaagccggtcgccatg
gtgaccggcgatcacccggtcattggagaggacgagatagacatgtatgaagactttgag
gacaaatcggactacagcagtggccatgagacacgggagcctgtcggcgccaactga
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