Oncorhynchus keta (chum salmon): 118402279
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Entry
118402279 CDS
T09424
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oke
Oncorhynchus keta (chum salmon)
Pathway
oke03013
Nucleocytoplasmic transport
oke03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oke00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118402279
03015 mRNA surveillance pathway
118402279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oke03019
]
118402279
Enzymes [BR:
oke01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118402279
5.6.2.5 RNA 5'-3' helicase
118402279
Messenger RNA biogenesis [BR:
oke03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118402279
mRNA cycle factors
Common to processing body (P body) and stress granule
118402279
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
118402279
NCBI-ProteinID:
XP_035656233
EnsemblRapid:
ENSOKEG00005046698
LinkDB
All DBs
Position
23:complement(37201622..37212463)
Genome browser
AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEDADLLGADTQGSEYEFTDFTLPSQTQTGQTQSQLDNQVNGP
DGVLQNGEDSVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLTNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AVNPGGRFMSTAMYDAREALIPGSVYDRSSTARTSNMYFQTHDQIGMIGPGPMASLNIPI
PFNLVMPPMPPPGYLGQVNGPQAGRGGGMKGKAGGGARGGRQRSRGMASHGGGNGQHGHM
SGSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVAL
SQDSTYQGERAYQHGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacaccgaggac
gccgacttgcttggagcagatacccagggttcggaatatgagttcacagattttacccta
ccgagccagactcaaacaggccagacgcagagtcagttggacaaccaggtgaatggacct
gatggagttctgcagaatggggaagactctgttgtaaaaacaagtcaactccttgcagag
ttgaactttgaagaagacgaggaggacacctattatactaaagacctcccagtccatgca
tgcagttactgtggtattcacgatccggcatgcgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacggggcaatacgtctggcagccacattgtgaaccacctggtcaga
gcaaagtccaaggaggtgactctgcacaaggacggtcctctgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtctttctcctggggttcatccccgccaaggccgac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctctcctggctg
gtgaagatcccctcagaacaggaacagcttcgggcccgccagatcaccgcccagcagatc
aataagctggaggagctctggaaggaaaaccccacagccactctggaggaccttgagaag
cctggcgtggacgaggagcctcagcacgtgctgctgcgctatgaggatgcctaccagtac
cagaacatatttggccccctggtcaaactggaggccgactacgataagaaactcaaagag
tcccagacccaagacaatataactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggtgatgaa
atttgcctgaggtacaagggagatcttgccccactctggaagggtattggacatgtcatc
aaagtaccagacaactatggcgacgagatagccattgagctgaggagcagtgctggggct
cccgtggaagtaccacataacttccaggttgactttgtgtggaagtccacctcttttgac
aggatgcaaagtgccctgaagacctttgccgtggacgagacctctgtgtccgggtacatc
taccacaagctgctcggtcacgaggtggaggacgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtgtatgctgtgaagact
gtgctgcagcgtcctctcagtctcattcaggggccccctggcacggggaaaacggtcacc
tctgccactgtagtctaccacctggccagacagggcaacgggccagtgctggtgtgcgct
cccagcaacatcgcagtggaccagctgactgagaagatccacatgtcgggcctgaaggtg
gtgaggctctgtgccaagagcagagaggccatcgactcccccgtgtccttcctggctctg
cacaaccagatccgcaacatggatagtataccagagcttcagaagctgcagcagctgaag
gacgagactggggagctgtcctcctctgatgagaagcgatacagggccctgaagcgcacc
gccgagagggaactactcacgaatgctgatgtgatctgctgtacctgtgtgggggcagga
gacccccgcctggccaagatgcagttccgctccatcctcattgatgagagcacgcaggcc
actgagcccgagtgcatggtgcctgtcatactgggggccaaacagctgattctggtggga
gaccactgccagctgggtccagtagtgatgtgtaagaaggcagccaaagcgggcctgtcc
cagtccctgtttgagcgtctggtggtgctgggcatcaggcccatccgtctgcaggtgcag
taccgtatgcacccggccctcagcgccttcccctccaacatcttctacgagggctccctg
cagaacggagtcaccgcggctgaccgcatcaagaaaggctttgactttcagtggccacag
ccagacaagcccatgttcttctatgtgacccagggccaggaggaaatcgcaagctccgga
acctcctatctaaacagaactgaggcttccaacgtggagaagatcaccactaggctgcta
aaggccggggccaagcctgaccagataggcatcatcaccccctacgagggccagaggtcc
tacctggtgcagtacatgcagttcagtggctctctccacaccaagctctatcaggaggtg
gagatagccagtgtcgatgccttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcatcggcttcctcaacgacccacgacgtctcaacgtg
gctctcactagggccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccaccttctcaactactacaaggagcagaaggtactggtggaggga
cccctcaacaacctgagggagagcctcatgcagttcagcaagcctcgcaagctggttaac
gccgtcaaccctgggggccgtttcatgagcacagccatgtatgatgccagggaagctctt
attcctggatctgtgtatgaccgcagcagcactgcacgtacatccaacatgtacttccag
acccacgaccagattggcatgattggcccaggccccatggcctctctgaacatccccatc
cccttcaacctggtcatgccccccatgcccccgccaggctacctgggccaggtcaacggc
ccccaagcaggccgtggaggaggtatgaagggcaaggcgggcggaggggcacgaggcggg
cggcagaggagccgtggtatggcaagccatggcgggggcaacgggcagcacggccacatg
agtggcagccaggccagccaggacctgggctcccagcccttctcccagggacccctcaca
cagggctacatcaccatgagccagccctcccagatgagccagcctggcctgtcccagcct
gaactctcccaggacagctaccttggagatgagttcaagtcccagattgacgtggccctc
tcccaagactccacctaccagggtgaacgagcctatcaacatggcgtgactggactgtcc
cagtactag
DBGET
integrated database retrieval system
