KEGG   Oncorhynchus kisutch (coho salmon): 109864678
Entry
109864678         CDS       T09179                                 
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04510  Focal adhesion
oki04512  ECM-receptor interaction
oki04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:oki00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    109864678
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    109864678
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    109864678
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:oki04147]
    109864678
   00536 Glycosaminoglycan binding proteins [BR:oki00536]
    109864678
Exosome [BR:oki04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   109864678
Glycosaminoglycan binding proteins [BR:oki00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   109864678
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 109864678
NCBI-ProteinID: XP_020308134
LinkDB
Position
LG19:23842300..23959625
AA seq 1669 aa
MTYFLTFSPLLLSVLLLLLSGIITPAYTDDVCSCTGKSRCHCDGVKGSKGEPGYPGYDGL
PGVVGYPGSEGNPGPFGPKGNLGFPGLSGPKGSRGLSGKPGFSGPPGQPGIPGNEGPMGP
SGTPGCNGTKGDSGYPGLPGVPGPVGLPGVHGLPGFKGDSYYFPPAAEVDGHLGPQGRDG
VKGQRGLPGRPGLPGLEGPSGTPGLPGLTGVQGEKGQEGPSPVIPGPRGQKGDQGPPGIP
GQKGIKLYAEGPKELKGEPGDTGEKGCTGQHGLPGRRGYKGNKGDQGEPGALGKPGKDGD
PGTYGIQGEKADVGYQGPPGTEGSMGDKGDRGPTGPPGDLIQINGRIKGLQGFPGPLGPP
GYSGNQGVIGFPGMKGEPGLSFPGAPGNPGPPGLAGDKGERGEPAPYIIGPPGPTGPPGN
DGPIGDRGPPGIPDLLRGNPGPPGPKGIKGIPGQPGDRGGFGETGEKGDVCRLCMPTNVS
PGPPGPAGEPGRPGDTGRDGDPGSKGSRGVKGLGGPPGPQGPYGLPGVPGSTGPTGDKSP
MSPGDRGPVGSPGAPGVPGSDGTDGVAGYPGQKGQPGLKGNPGPPGPKGDRGDAGSQGIG
GRTGQMGTQGPPGVGPPGGPGQKGNLGVQGLRGRPGDPGEKGSAGETITTTGDPGLKGEK
GHQGNPGPSGNPGINGYPGFPGNFGAKGDRGLSVRGPPGNTGPKGEKGQPGVAGAPGIGS
MGRPGPSGAPGMPGPKGDFRPGLPGLPGRPGPPGEDGSLGLTGDSGLPGLGRSPGLPGRD
GPQGDRGSKGAEGLPGLPGVAGECTLGIPGTPGAVGLKGIIGLTGTRGQKGVQGDSGLPG
RGAPGLIGPFGRPGFDGPPGPGGAAGLNGFRGRDGVPGVPGLRGDMGPSGACGTPGPDGG
PGPGGRLGPKGLMGADGVKGRVGARGPVGDSGAPGDIGVTTYIEVPGDPGDPGPTALSGL
TGAKGDLGVIGHNGASGKDGIPGSAGPQGAVGDPGRDGQKGSPGFNGNPGVAGDMGVPGV
KGEKGGTGGRGEPGSSGRPGPNGVNGVKGEPSLPGPGAKGRQGEKGVPGFPGFPGEKGEM
GVAGRFGTLGAIGPTGPKGREGLQGSRGPPGPAGEKGINGLPGNAGCHGQNGLQGSPGLA
GDPGTAGPRGSQGRDGIPGPAGEKGDMGAPGIGPKGTDGKTGQSGLKGDVGIPGRFGPPG
PSGLLGDIGPPGPPGPMGLSGSPGRDGMCFEGLKGDRGQNGVPGPQGMQGPRGPPGPPGP
GFKGDKGNKGAMGLLGTPGYRGDTGVQGRPGNDGRPGGLGVKGEMGQLGDIGPNGQKGDA
GPAGPVGCLGQKGQSGAPGPKGKDDLTMVVLIPGEQGLPGDLGGRGEPGPTGAQGRNGPP
GLPGPKGVLGLDGPIGLPGFQAAKGDRGFPGPQGIQGEQGTPGAKGPRGSPGPYFAGPIE
DGFLFTRHSQRQNVPQCPGGSNFIYSGYSLLFINGNNRGHGQDLGTLGSCLPRFSTMPFL
FCNTDSTCRYASRNDYSYWLSTDEAMPSDMALISGGSLESYVSRCAVCETKANIIAVHSQ
TNQIPVCPRGWLSLWAGYSFVMQTGAGAEGSGQPLASPGSCLEEFRKIPFIECHGRGTCN
YYTDSYSYWLASLDPENMFSKPRPQTVKGDCPGSIVSRCQVCMKQWQRP
NT seq 5010 nt   +upstreamnt  +downstreamnt
atgacatactttctcactttttccccactgctcctgagcgtcctgttgctactgctcagt
ggcatcatcacacctgcatacacagatgatgtgtgtagctgcaccggaaagtccaggtgt
cactgtgatggagtaaaaggcagtaagggtgagcctgggtatccaggttatgatgggttg
ccaggagtggttggttatccaggttctgaaggtaatcctggaccttttggccctaaggga
aatcttggctttcctggattgtcaggacccaaaggctcacggggtctctctgggaaacct
gggttctctggaccacctgggcagccaggaatcccaggaaatgaaggaccaatggggcca
tcaggaaccccaggatgcaatgggacgaagggggacagtggatacccagggttacctggg
gtgccgggacctgttggattaccaggtgttcatggattgccaggatttaagggagactcc
tactacttcccacccgctgctgaggttgatggacatcttggaccacaagggagagatggt
gtcaagggtcagcgagggttacctggacggccgggtcttcctgggctggagggaccgagc
gggactccaggattacctgggttaacaggtgtacagggagagaagggccaggaaggtcca
agccctgtaattccaggcccaagaggtcaaaagggtgaccaaggccctcccgggatacct
ggacagaagggcataaagctgtatgcagagggacccaaggaactgaagggggagccaggt
gatacaggagagaaggggtgtacaggccagcatggtctccctgggcgtcgtggatataaa
gggaacaaaggcgaccaaggagaacctggggctctggggaaacctgggaaagatggggac
cctgggacctatggaattcagggtgagaaagctgatgtgggctaccagggacctcctgga
acagaaggttcaatgggtgacaaaggtgaccgcggacccacaggtcctccaggggatttg
attcagatcaatgggagaatcaaaggcttgcagggttttcctgggcccctcggaccccct
ggctatagtggtaatcaaggtgtgattggttttcctggaatgaagggggaaccagggttg
tctttccctggtgcccctgggaatcctggtccccctggtttagctggggataaaggggag
aggggggagcctgccccctacataattggcccccctggacccactggcccccctggaaac
gatggccccataggtgaccgtggtccccctggaattccagatctgttgagaggcaaccct
ggaccacccggtcctaaaggcatcaaaggcatcccaggacaaccaggagatagaggcggg
ttcggagaaacaggtgagaagggtgatgtctgtcgactctgcatgcccactaatgtgagc
cctggaccaccaggacctgccggagagcctggtaggcctggagatacaggtcgagatggt
gatcctggatccaagggatctagaggagtcaaaggtcttggaggtccaccaggtccacag
ggtccctatggtttaccaggtgtgccaggttctacaggacccacgggggacaaaagtccc
atgtccccaggagacagggggcctgttggctcacctggggctccaggagttcctgggagc
gatgggactgacggggtcgctggatacccaggacagaaaggccagcctgggctaaagggc
aaccctggacctccggggcccaagggtgatcggggcgatgccggctctcagggtataggt
ggacggacaggccagatggggactcagggccccccaggtgtggggcccccagggggccct
ggacagaagggcaacctgggagtgcaaggcctgcgagggagacctggagatccaggagag
aaaggctcagcgggtgagacgataacaaccacaggagacccaggactgaagggagagaag
ggtcatcaaggcaacccaggaccttcagggaatcctggtataaatggctatcctggcttc
cctggcaatttcggcgccaagggggatagaggtctgtctgtccggggccctcctggaaac
actgggcctaaaggtgagaagggccagccgggggttgctggtgccccagggattggtagt
atgggacgaccaggaccatccggagctcccgggatgccaggccctaagggtgatttcaga
ccagggctcccagggctgccaggtagaccaggccccccaggggaggatggttctctgggg
ctgactggagactctggtctgcctgggcttggtagatcgcctggcctaccaggaagagat
ggtccacagggagacagaggcagtaaaggtgctgagggcttgcctggtctgcctggggtt
gctggggagtgtactctaggcattccaggcactccgggggctgtaggtctcaaaggaatc
attggcttaacagggaccagaggacagaagggggtacagggcgattcaggtctgcctggc
agaggggccccaggattgattgggccgtttggacggcccgggtttgatggacccccggga
cctgggggggctgccggcctgaatggattcagaggaagagatggtgtacctggggtacca
ggcctgagaggagacatggggccatcaggagcgtgtggtacaccaggaccagacggaggc
ccaggaccagggggacgacttggccctaaaggtctgatgggtgctgatggggtgaagggc
cgtgtaggagccaggggacctgtgggagattctggggctcctggagatattggagtcaca
acatacatcgaggtccctggggaccctggggacccaggacctacagctctaagcggctta
acaggtgccaaaggagatctaggtgtgatagggcacaatggagccagtggcaaggatggg
attcccgggagcgccgggccgcaaggtgctgttggcgacccaggcagagatggccagaaa
ggaagtcctggtttcaatggaaatcctggagtcgcaggagatatgggtgtgccaggtgta
aagggtgagaaagggggaacaggaggtcgtggagagcctggttcatcgggaagaccaggt
ccaaatggagtaaatggagtgaaaggagagcccagcctccctggaccaggagctaaagga
cgacaaggagaaaagggagtgccagggtttccaggttttccaggagagaagggggagatg
ggtgtagcagggaggttcggaaccctgggggccatcggccccacaggacccaagggaaga
gaaggactacagggatcacgaggacctccgggaccagccggggagaagggcattaatggt
ctcccaggcaatgctggctgtcatggccagaatggcctgcaagggagcccaggattggct
ggtgacccagggactgcaggccccagaggttcccagggtagagacggcatccctggccca
gcaggagagaaaggagacatgggagcccctggcattggaccaaaaggcacagacggaaag
acgggccaatctggacttaagggggatgtggggatacctggccgctttggccctcctggt
ccctcagggcttttgggggacattggacctccaggcccccctggtcctatgggactgtct
ggaagtcctggccgggatggaatgtgctttgaagggctaaaaggagaccgtggacaaaat
ggtgtccctggaccccaaggtatgcaggggccacggggacctcctggtccaccaggacct
ggctttaaaggagataaagggaacaaaggtgccatgggtctcctgggtacgcctgggtac
agaggagacacaggggtacagggcagaccgggtaatgatggcagaccaggtggtttggga
gtcaaaggggagatgggacagttaggagacatcggaccaaacggtcagaaaggagatgca
ggacctgcaggacctgtaggttgccttggacagaaagggcagtctggagcaccagggcct
aaggggaaagatgatctcaccatggtggtactgatccccggagaacaggggctgcctggt
gacctggggggcagaggagagcctggacccacaggagctcagggacgcaacggaccacca
ggactcccaggtccaaaaggtgtcttgggcctagatgggccaataggactgcctggattc
caggcagccaagggagacagagggttccctggaccacaaggtatccaaggtgagcagggg
actccaggagccaaaggcccccggggctctccaggtccttactttgccgggccaatagag
gacggcttcctattcacccgtcacagccagaggcagaatgtgccccagtgcccagggggc
agcaacttcatctactccggatactccctcctcttcatcaacggcaacaacagaggtcat
ggccaggatctgggtacactgggaagctgcctgcctcgtttctctaccatgcccttctta
ttctgcaacacggacagcacgtgccgctacgcctcccgtaacgactactcctactggctg
tccacggatgaggccatgccaagcgacatggccctcatctctggtggttcactggagagc
tatgtcagcaggtgtgcagtgtgtgagaccaaagcaaacatcatcgctgttcacagtcag
accaaccagatccctgtttgtccacgcggctggctctctctctgggctggctactctttt
gtcatgcaaacaggggctggagcggagggctctggccagcccctggcctctccgggctcc
tgcctagaagagttccggaagattcccttcattgagtgccatgggcgagggacatgcaac
tactacactgactcctacagttactggctggcctccctggaccccgaaaacatgttcagt
aaacccaggcctcagacagtgaagggagactgcccgggtagtatagtcagtcgttgtcag
gtctgtatgaagcagtggcagcgaccctaa

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