Oncorhynchus kisutch (coho salmon): 109864678
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Entry
109864678 CDS
T09179
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki04510
Focal adhesion
oki04512
ECM-receptor interaction
oki04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109864678
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109864678
09142 Cell motility
04820 Cytoskeleton in muscle cells
109864678
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oki04147
]
109864678
00536 Glycosaminoglycan binding proteins [BR:
oki00536
]
109864678
Exosome [BR:
oki04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109864678
Glycosaminoglycan binding proteins [BR:
oki00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109864678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109864678
NCBI-ProteinID:
XP_020308134
LinkDB
All DBs
Position
LG19:23842300..23959625
Genome browser
AA seq
1669 aa
AA seq
DB search
MTYFLTFSPLLLSVLLLLLSGIITPAYTDDVCSCTGKSRCHCDGVKGSKGEPGYPGYDGL
PGVVGYPGSEGNPGPFGPKGNLGFPGLSGPKGSRGLSGKPGFSGPPGQPGIPGNEGPMGP
SGTPGCNGTKGDSGYPGLPGVPGPVGLPGVHGLPGFKGDSYYFPPAAEVDGHLGPQGRDG
VKGQRGLPGRPGLPGLEGPSGTPGLPGLTGVQGEKGQEGPSPVIPGPRGQKGDQGPPGIP
GQKGIKLYAEGPKELKGEPGDTGEKGCTGQHGLPGRRGYKGNKGDQGEPGALGKPGKDGD
PGTYGIQGEKADVGYQGPPGTEGSMGDKGDRGPTGPPGDLIQINGRIKGLQGFPGPLGPP
GYSGNQGVIGFPGMKGEPGLSFPGAPGNPGPPGLAGDKGERGEPAPYIIGPPGPTGPPGN
DGPIGDRGPPGIPDLLRGNPGPPGPKGIKGIPGQPGDRGGFGETGEKGDVCRLCMPTNVS
PGPPGPAGEPGRPGDTGRDGDPGSKGSRGVKGLGGPPGPQGPYGLPGVPGSTGPTGDKSP
MSPGDRGPVGSPGAPGVPGSDGTDGVAGYPGQKGQPGLKGNPGPPGPKGDRGDAGSQGIG
GRTGQMGTQGPPGVGPPGGPGQKGNLGVQGLRGRPGDPGEKGSAGETITTTGDPGLKGEK
GHQGNPGPSGNPGINGYPGFPGNFGAKGDRGLSVRGPPGNTGPKGEKGQPGVAGAPGIGS
MGRPGPSGAPGMPGPKGDFRPGLPGLPGRPGPPGEDGSLGLTGDSGLPGLGRSPGLPGRD
GPQGDRGSKGAEGLPGLPGVAGECTLGIPGTPGAVGLKGIIGLTGTRGQKGVQGDSGLPG
RGAPGLIGPFGRPGFDGPPGPGGAAGLNGFRGRDGVPGVPGLRGDMGPSGACGTPGPDGG
PGPGGRLGPKGLMGADGVKGRVGARGPVGDSGAPGDIGVTTYIEVPGDPGDPGPTALSGL
TGAKGDLGVIGHNGASGKDGIPGSAGPQGAVGDPGRDGQKGSPGFNGNPGVAGDMGVPGV
KGEKGGTGGRGEPGSSGRPGPNGVNGVKGEPSLPGPGAKGRQGEKGVPGFPGFPGEKGEM
GVAGRFGTLGAIGPTGPKGREGLQGSRGPPGPAGEKGINGLPGNAGCHGQNGLQGSPGLA
GDPGTAGPRGSQGRDGIPGPAGEKGDMGAPGIGPKGTDGKTGQSGLKGDVGIPGRFGPPG
PSGLLGDIGPPGPPGPMGLSGSPGRDGMCFEGLKGDRGQNGVPGPQGMQGPRGPPGPPGP
GFKGDKGNKGAMGLLGTPGYRGDTGVQGRPGNDGRPGGLGVKGEMGQLGDIGPNGQKGDA
GPAGPVGCLGQKGQSGAPGPKGKDDLTMVVLIPGEQGLPGDLGGRGEPGPTGAQGRNGPP
GLPGPKGVLGLDGPIGLPGFQAAKGDRGFPGPQGIQGEQGTPGAKGPRGSPGPYFAGPIE
DGFLFTRHSQRQNVPQCPGGSNFIYSGYSLLFINGNNRGHGQDLGTLGSCLPRFSTMPFL
FCNTDSTCRYASRNDYSYWLSTDEAMPSDMALISGGSLESYVSRCAVCETKANIIAVHSQ
TNQIPVCPRGWLSLWAGYSFVMQTGAGAEGSGQPLASPGSCLEEFRKIPFIECHGRGTCN
YYTDSYSYWLASLDPENMFSKPRPQTVKGDCPGSIVSRCQVCMKQWQRP
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgacatactttctcactttttccccactgctcctgagcgtcctgttgctactgctcagt
ggcatcatcacacctgcatacacagatgatgtgtgtagctgcaccggaaagtccaggtgt
cactgtgatggagtaaaaggcagtaagggtgagcctgggtatccaggttatgatgggttg
ccaggagtggttggttatccaggttctgaaggtaatcctggaccttttggccctaaggga
aatcttggctttcctggattgtcaggacccaaaggctcacggggtctctctgggaaacct
gggttctctggaccacctgggcagccaggaatcccaggaaatgaaggaccaatggggcca
tcaggaaccccaggatgcaatgggacgaagggggacagtggatacccagggttacctggg
gtgccgggacctgttggattaccaggtgttcatggattgccaggatttaagggagactcc
tactacttcccacccgctgctgaggttgatggacatcttggaccacaagggagagatggt
gtcaagggtcagcgagggttacctggacggccgggtcttcctgggctggagggaccgagc
gggactccaggattacctgggttaacaggtgtacagggagagaagggccaggaaggtcca
agccctgtaattccaggcccaagaggtcaaaagggtgaccaaggccctcccgggatacct
ggacagaagggcataaagctgtatgcagagggacccaaggaactgaagggggagccaggt
gatacaggagagaaggggtgtacaggccagcatggtctccctgggcgtcgtggatataaa
gggaacaaaggcgaccaaggagaacctggggctctggggaaacctgggaaagatggggac
cctgggacctatggaattcagggtgagaaagctgatgtgggctaccagggacctcctgga
acagaaggttcaatgggtgacaaaggtgaccgcggacccacaggtcctccaggggatttg
attcagatcaatgggagaatcaaaggcttgcagggttttcctgggcccctcggaccccct
ggctatagtggtaatcaaggtgtgattggttttcctggaatgaagggggaaccagggttg
tctttccctggtgcccctgggaatcctggtccccctggtttagctggggataaaggggag
aggggggagcctgccccctacataattggcccccctggacccactggcccccctggaaac
gatggccccataggtgaccgtggtccccctggaattccagatctgttgagaggcaaccct
ggaccacccggtcctaaaggcatcaaaggcatcccaggacaaccaggagatagaggcggg
ttcggagaaacaggtgagaagggtgatgtctgtcgactctgcatgcccactaatgtgagc
cctggaccaccaggacctgccggagagcctggtaggcctggagatacaggtcgagatggt
gatcctggatccaagggatctagaggagtcaaaggtcttggaggtccaccaggtccacag
ggtccctatggtttaccaggtgtgccaggttctacaggacccacgggggacaaaagtccc
atgtccccaggagacagggggcctgttggctcacctggggctccaggagttcctgggagc
gatgggactgacggggtcgctggatacccaggacagaaaggccagcctgggctaaagggc
aaccctggacctccggggcccaagggtgatcggggcgatgccggctctcagggtataggt
ggacggacaggccagatggggactcagggccccccaggtgtggggcccccagggggccct
ggacagaagggcaacctgggagtgcaaggcctgcgagggagacctggagatccaggagag
aaaggctcagcgggtgagacgataacaaccacaggagacccaggactgaagggagagaag
ggtcatcaaggcaacccaggaccttcagggaatcctggtataaatggctatcctggcttc
cctggcaatttcggcgccaagggggatagaggtctgtctgtccggggccctcctggaaac
actgggcctaaaggtgagaagggccagccgggggttgctggtgccccagggattggtagt
atgggacgaccaggaccatccggagctcccgggatgccaggccctaagggtgatttcaga
ccagggctcccagggctgccaggtagaccaggccccccaggggaggatggttctctgggg
ctgactggagactctggtctgcctgggcttggtagatcgcctggcctaccaggaagagat
ggtccacagggagacagaggcagtaaaggtgctgagggcttgcctggtctgcctggggtt
gctggggagtgtactctaggcattccaggcactccgggggctgtaggtctcaaaggaatc
attggcttaacagggaccagaggacagaagggggtacagggcgattcaggtctgcctggc
agaggggccccaggattgattgggccgtttggacggcccgggtttgatggacccccggga
cctgggggggctgccggcctgaatggattcagaggaagagatggtgtacctggggtacca
ggcctgagaggagacatggggccatcaggagcgtgtggtacaccaggaccagacggaggc
ccaggaccagggggacgacttggccctaaaggtctgatgggtgctgatggggtgaagggc
cgtgtaggagccaggggacctgtgggagattctggggctcctggagatattggagtcaca
acatacatcgaggtccctggggaccctggggacccaggacctacagctctaagcggctta
acaggtgccaaaggagatctaggtgtgatagggcacaatggagccagtggcaaggatggg
attcccgggagcgccgggccgcaaggtgctgttggcgacccaggcagagatggccagaaa
ggaagtcctggtttcaatggaaatcctggagtcgcaggagatatgggtgtgccaggtgta
aagggtgagaaagggggaacaggaggtcgtggagagcctggttcatcgggaagaccaggt
ccaaatggagtaaatggagtgaaaggagagcccagcctccctggaccaggagctaaagga
cgacaaggagaaaagggagtgccagggtttccaggttttccaggagagaagggggagatg
ggtgtagcagggaggttcggaaccctgggggccatcggccccacaggacccaagggaaga
gaaggactacagggatcacgaggacctccgggaccagccggggagaagggcattaatggt
ctcccaggcaatgctggctgtcatggccagaatggcctgcaagggagcccaggattggct
ggtgacccagggactgcaggccccagaggttcccagggtagagacggcatccctggccca
gcaggagagaaaggagacatgggagcccctggcattggaccaaaaggcacagacggaaag
acgggccaatctggacttaagggggatgtggggatacctggccgctttggccctcctggt
ccctcagggcttttgggggacattggacctccaggcccccctggtcctatgggactgtct
ggaagtcctggccgggatggaatgtgctttgaagggctaaaaggagaccgtggacaaaat
ggtgtccctggaccccaaggtatgcaggggccacggggacctcctggtccaccaggacct
ggctttaaaggagataaagggaacaaaggtgccatgggtctcctgggtacgcctgggtac
agaggagacacaggggtacagggcagaccgggtaatgatggcagaccaggtggtttggga
gtcaaaggggagatgggacagttaggagacatcggaccaaacggtcagaaaggagatgca
ggacctgcaggacctgtaggttgccttggacagaaagggcagtctggagcaccagggcct
aaggggaaagatgatctcaccatggtggtactgatccccggagaacaggggctgcctggt
gacctggggggcagaggagagcctggacccacaggagctcagggacgcaacggaccacca
ggactcccaggtccaaaaggtgtcttgggcctagatgggccaataggactgcctggattc
caggcagccaagggagacagagggttccctggaccacaaggtatccaaggtgagcagggg
actccaggagccaaaggcccccggggctctccaggtccttactttgccgggccaatagag
gacggcttcctattcacccgtcacagccagaggcagaatgtgccccagtgcccagggggc
agcaacttcatctactccggatactccctcctcttcatcaacggcaacaacagaggtcat
ggccaggatctgggtacactgggaagctgcctgcctcgtttctctaccatgcccttctta
ttctgcaacacggacagcacgtgccgctacgcctcccgtaacgactactcctactggctg
tccacggatgaggccatgccaagcgacatggccctcatctctggtggttcactggagagc
tatgtcagcaggtgtgcagtgtgtgagaccaaagcaaacatcatcgctgttcacagtcag
accaaccagatccctgtttgtccacgcggctggctctctctctgggctggctactctttt
gtcatgcaaacaggggctggagcggagggctctggccagcccctggcctctccgggctcc
tgcctagaagagttccggaagattcccttcattgagtgccatgggcgagggacatgcaac
tactacactgactcctacagttactggctggcctccctggaccccgaaaacatgttcagt
aaacccaggcctcagacagtgaagggagactgcccgggtagtatagtcagtcgttgtcag
gtctgtatgaagcagtggcagcgaccctaa
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integrated database retrieval system