Oncorhynchus kisutch (coho salmon): 109871651
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Entry
109871651 CDS
T09179
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03013
Nucleocytoplasmic transport
oki03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109871651 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
109871651 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109871651 (thoc1)
03041 Spliceosome [BR:
oki03041
]
109871651 (thoc1)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
109871651 (thoc1)
Spliceosome [BR:
oki03041
]
Complex C
Other components
EJC/TREX
109871651 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
109871651 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Stonustoxin_helical
Motif
Other DBs
NCBI-GeneID:
109871651
NCBI-ProteinID:
XP_020318168
Ensembl:
ENSOKIG00005033180
LinkDB
All DBs
Position
LG27:complement(13341835..13349598)
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AA seq
657 aa
AA seq
DB search
MSPPILFNFNDAKDTFTAATRSALDNKTSKPLINAFNQITGNETEKKTTLDQALRQVLEE
QIVEKKALVDDFLSLIYLSIDGVTEGICSATTPFLLLGDILDCLPLDQCDKIFSFVEENV
STWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQESTLGQRPTEEKEDGMEVEEGEMGDEEPGAPAPCSIPIDYNLYRKF
WTLQDYFRNPVQCYEKFSWITFLKYSDETLAVFKSFKLDDMQASKRKLEELRTAGGDHVY
FAKFLTSEKLMDLQLSDSNFRRHILLQYLVLFQYLKGQVKFKSSSCILNDDQCSWMEETT
KLVYQLLKEIPPDGDKFATMVEHVLNTEENWNSWKNEGCPSFVKDRPVDDKPKRPTRKRQ
APEDFLGKGPDRKVFMGNDELTRLWNLNHDNMAACQSESREFMPSLEDFFEEAIEQADPA
NMVENEYKVVHNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLESMVIKLAKELPKDL
PSEEIKTGEEDDEDNSDTLLKESNDSPSMQNKLVSNQQMDEIAAKLGAQWKTLAGQLEIK
AAEIREIETDSEDVDMQAKLLLVAWQDREGTQATVESLVTALNAAGFPKIADILNET
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccgatcttattcaacttcaacgatgcaaaagatacatttactgccgcaacc
agaagtgcgttggacaacaaaaccagcaaacctttgataaacgcattcaaccagatcact
ggaaatgagacagagaagaagaccacccttgaccaagctctaaggcaggtcctggaggag
cagattgtggaaaagaaagcacttgtcgatgacttcctgtctctcatctatctcagcatt
gatggagtcactgaaggtatctgctccgccactactcctttcctacttttgggagatatt
ctggactgtctacctcttgaccagtgtgataagatcttctcctttgttgaagagaatgtc
tccacctggaagtctaactccttctacactgctgggaagaactacctgttaaggatgtgt
aatgatcttttgaggaggttgtccaagtctcagaacacagtcttctgtggtcggatccag
ctgttcctggctcgtctcttccccctgtcggagaaatcaggtctgaacttgcagagccag
tttaatctcgacaacatcacagtgttcaacaaaaacgagcaggaaagcactctcggtcaa
aggcccacagaggaaaaagaggatgggatggaggtggaggagggggagatgggagatgag
gaacctggtgcacctgcaccttgttccatccccattgactacaacctatacaggaagttc
tggaccctgcaggactactttagaaaccctgttcagtgttacgaaaagttctcctggatt
actttcctcaagtattcagatgagacgttggcggtgtttaagagcttcaagctggacgac
atgcaggcttcgaagaggaagctggaggagctgaggacagcgggaggagaccacgtctac
ttcgccaagttcctcaccagcgagaagctaatggacctgcagctcagtgacagtaacttc
cgacgacacatcctcctgcagtaccttgtcctgttccagtacctcaagggacaggtcaag
ttcaaaagctccagttgtatcctgaatgatgaccagtgttcgtggatggaggagaccacc
aaactggtgtaccagcttctcaaagagatcccacctgatggagacaagtttgccaccatg
gtcgagcatgtcttaaacacagaggagaactggaactcgtggaaaaatgagggatgtccg
agctttgtgaaggaccgaccagtagatgacaaacccaagagacccacgaggaaaagacaa
gctccagaagatttcctgggtaaaggccctgacaggaaggtcttcatggggaatgatgaa
ctcacgagactttggaatctgaaccacgacaatatggcggcttgtcagtccgagagcagg
gagtttatgccttctctggaggatttctttgaagaggccattgaacaggcagacccagcc
aacatggtggaaaatgaatacaaggtggttcataactctaactatggatggcgagccctg
cgtctgctgtccaggaggagtcctcacttcttccagcctaccaaccagcagttcaagagc
ctggccgactacctagagagcatggtcatcaaactggccaaggagctgccgaaggacctt
ccgtctgaggagataaagaccggggaggaagacgatgaagacaacagtgacaccctactc
aaggagagcaacgacagtccgagcatgcagaacaagctggtgtccaaccagcagatggat
gagatagcagccaagctgggtgcccagtggaagaccttggctggccagctggagataaag
gccgcagagatccgggagattgagacagacagcgaggatgtggacatgcaggccaagctg
ctgctggtggcctggcaggaccgcgaggggacacaggccaccgttgagagcctggttaca
gccctcaacgctgctggcttccccaagatcgcagacatcctcaatgagacatag
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integrated database retrieval system
