KEGG   Oncorhynchus kisutch (coho salmon): 109874778
Entry
109874778         CDS       T09179                                 
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki03030  DNA replication
oki03410  Base excision repair
oki03420  Nucleotide excision repair
oki03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    109874778 (lig1)
   03410 Base excision repair
    109874778 (lig1)
   03420 Nucleotide excision repair
    109874778 (lig1)
   03430 Mismatch repair
    109874778 (lig1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:oki03032]
    109874778 (lig1)
   03400 DNA repair and recombination proteins [BR:oki03400]
    109874778 (lig1)
Enzymes [BR:oki01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     109874778 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     109874778 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     109874778 (lig1)
DNA replication proteins [BR:oki03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    109874778 (lig1)
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     109874778 (lig1)
DNA repair and recombination proteins [BR:oki03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     109874778 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     109874778 (lig1)
   MMR (mismatch excision repair)
    Other MMR factors
     109874778 (lig1)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 109874778
NCBI-ProteinID: XP_031666133
Ensembl: ENSOKIG00005032269
LinkDB
Position
LG30:39002309..39030274
AA seq 1167 aa
MQRSISSFFQPKTGKEKESKKSDGPGKDEPVKDKPEPIKRPLKVQNGVHEEPDSPVKKFT
KRSRQILDSDDEAPAGIEQEPEDKAVQPKDEVFKAVTNPLSPASPVTSSASPTPGTPDTP
TSISPSGIPKRRTARKQFPKRKLDSRSGSEKEEEEQGQQNKRAKVEETQDSTENEEEAMD
VGGENSVDKPEVAQNDPEGKEMDEEKTKDGEKEKALYVKATEEEKGKSEKDKERSPKGQK
VKERSPKGQKVKERSPKGQKVKERSPKGQKVKERSPKGQKVKERSPKERSPKERSPKERS
PKERSPKERSPKERSPKGHKAVKDMKEEKLSESPQAKKAPTINSFFAPRKAAVKMERPEK
SEGEGKEKSEGEGKEKSEGEGKEKSEGEGKEKSEGEGKEKSEGVGKKKSEGKEKSEGKEK
SEGKEKSEGKKKSEGKEKSEGKEKSEGKEKSEGKEKSEGKEKSEGKEKSEGKEKSEGKEK
SEGKEKSEGYIKEEATGSRTTEDVKDKKGEKTAQAQYDPSRPNYHPVDHACWSRGQRVPY
LAVARTFEKIEEDSGRLRNIETLSNLLRSVIILSPEDLLCCVYLCLNQLGPAYMGLELGV
GETVLMKAVAQATGRQLDKIKAEAAEKGDLGLVAESSRNNQRMMFQPANLIAGGVFNKLK
DIGNMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCL
SPPGQDFPPAVIDAGKGMSAEKQKAWIEEKSLLLKQTYCEMPNYDVIIPVILKEGIDELP
KHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFSR
NQEDNTTKYPDIISRIHTVKNESVISCVLDTEAVAWDREKKQIQPFQVLITRKRKDVAAA
DIKVQVCVYAFDLLYLNGESLVKQPLSCRRALLKKSFQEKEGEFVFARAIDSDNTDAIAE
FLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTMDLCVIGAYLGKG
KRAGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKEHILPKPRPYYRVDQS
TEPDLWLDAVQVWEVKCADLSLSPIYKAGMGLCDPEKGISLRFPRFLRIRDDKKPEEATS
GGQIADLYRKQQVVQNQGDKADLEDYY
NT seq 3504 nt   +upstreamnt  +downstreamnt
atgcagcgaagtatatcatctttctttcagcccaaaacgggcaaagagaaggagagcaaa
aaaagtgatggaccggggaaagacgagccggtgaaagacaagccagaaccaatcaaaagg
cctctcaaagttcagaatggggtccatgaggagcctgattcgccagtgaagaagttcact
aaacgcagtcgtcagatcttggacagtgatgatgaggctccagccggaatagaacaggag
ccagaggacaaggctgtgcaacccaaggatgaagtattcaaggctgttaccaaccccctg
tcccccgcctctccagtgacctcatccgcctcccccacccctggaacccctgacaccccc
acttccatctcaccctccggaatacccaaacgccgcaccgccaggaagcagttccccaag
agaaagctggacagcaggagtggcagtgaaaaggaggaggaagaacaaggacagcagaat
aaaagggcaaaggttgaggagacgcaggacagcaccgagaatgaagaggaagcgatggac
gtgggaggagagaacagtgtggataagcctgaggtggcgcagaacgacccggaggggaaa
gagatggatgaagagaagaccaaagatggagagaaggagaaagcactttatgtgaaagcg
accgaggaggaaaaaggaaaaagtgaaaaggataaagagagaagtcctaagggtcaaaag
gttaaagagagaagtcctaagggtcaaaaggttaaagagagaagtcctaagggtcaaaag
gttaaagagagaagtcctaagggtcaaaaggttaaagagagaagtcctaagggtcagaag
gttaaagagagaagtcctaaagagagaagtcctaaagagagaagtcctaaagagagaagt
cctaaagagagaagtcctaaagagagaagtcctaaagagagaagtcctaagggtcacaag
gcggtaaaggatatgaaagaagagaaattgtcagaaagcccccaagccaaaaaagccccc
accatcaacagtttctttgctcccaggaaggctgctgtaaagatggagagaccagagaag
agcgagggagagggaaaggagaagagcgagggagagggaaaggagaagagcgagggagag
ggaaaggagaagagcgagggagagggaaaggagaagagcgagggagagggaaaggagaag
agcgagggagttggaaagaagaagagcgagggaaaggagaagagcgagggaaaggagaag
agcgagggaaaggagaagagcgagggaaagaagaagagcgagggaaaggagaagagcgag
ggaaaggagaagagcgagggaaaggagaagagcgagggaaaggagaagagcgagggaaag
gagaagagcgagggaaaggagaagagcgagggaaaggagaagagcgagggaaaggagaag
agcgagggaaaggagaagagcgaggggtatataaaggaagaggctactgggtcccgtacc
acggaggacgttaaagacaagaaaggagagaagactgcccaggcccagtatgacccgtcc
agacccaactaccaccccgtagaccacgcttgctggagccggggacagagggtcccgtat
ttggctgttgcacgcacctttgaaaagattgaggaagattctggcagattgaggaacatt
gaaacattatcaaatctcctacgctctgttatcatcctctctccagaggacctgctgtgc
tgcgtctacctgtgtctcaatcagctgggtcctgcttacatggggctggagctgggagtg
ggagaaactgttctgatgaaggctgtcgcccaagctactgggcgacagttggacaaaatc
aaggcggaggctgcagagaagggggacttggggttggtggctgagagttcccgtaacaac
cagagaatgatgttccagccagccaatctgattgcagggggtgtgttcaacaaactgaaa
gacatcgggaacatgagtgggaattctgccatgaataagaagattgacatcatcaaaggt
ctctttgtagcctgtcgtttctctgaagccagatacattgtcaggtcgctggcagggaag
ctgaggattggcttggctgaacagagtgtactgtctgccctgagtcaggccgtgtgtctg
tctcctccaggacaagacttccccccggcggtgattgacgcagggaaaggaatgagtgca
gaaaaacagaaagcttggatagaagagaagagccttctcctcaaacagacttactgtgag
atgcccaactatgatgtcatcatcccagtcattctgaaggaggggattgatgaactcccc
aaacactgcaaactcactccaggtgtaccattgaggcccatgctggctcaccccaccaaa
ggtgtaggagaggtgatgaagagatttgatgaagccgccttcacctgcgagtacaagtat
gatggagaacgagcacagatccatatcttggagaacggggaagtgcgtattttcagtcgt
aaccaggaggataataccaccaaatatcctgacatcatctctcgcattcatacggtaaag
aatgagtctgtgatatcctgtgtgttggacactgaggcagtagcttgggacagagagaag
aaacagatccaaccgttccaggttctcatcacacggaagagaaaggacgtggctgcagct
gatatcaaggtccaagtgtgtgtttacgccttcgacctgctgtatctcaatggagagtct
ctagtgaagcagcccttgtcatgtcgcagggctctgttgaagaagagcttccaggagaag
gagggagagtttgtgttcgcccgcgccatcgactcagacaacacagacgccatagctgag
ttcctggagcaatcggttcgagactcctgtgagggactcatggtgaagactctggagaaa
gatgccacgtatgaaatcgccaagcgctctcacaactggctcaagctgaagaaggattat
ctggatggcgtgggggacacgatggatctgtgtgtgatcggagcgtatctggggaagggc
aagagagcagggacctacggaggctttctgctcgcctgctacgatgaggacaatgaagag
ttccagtccgtctgcaagattgggacaggtttcaaggatgaagatttggagcaacattac
aaattcttaaaggagcatattttgccaaagccccgcccctattaccgtgtggaccaatca
actgagcccgacttgtggctcgatgccgtgcaagtatgggaagtgaagtgtgccgaccta
tcgctgtcgccgatctacaaggctggcatgggattgtgtgacccagagaagggcatctct
cttcggttcccacgcttcctgaggatcagagatgataagaagccggaggaggccacttca
ggaggacagattgctgatttatacaggaagcagcaggttgttcagaatcagggtgacaaa
gctgacctcgaggactactactga

DBGET integrated database retrieval system