Oncorhynchus kisutch (coho salmon): 109874778
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Entry
109874778 CDS
T09179
Symbol
lig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Pathway
oki03030
DNA replication
oki03410
Base excision repair
oki03420
Nucleotide excision repair
oki03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
109874778 (lig1)
03410 Base excision repair
109874778 (lig1)
03420 Nucleotide excision repair
109874778 (lig1)
03430 Mismatch repair
109874778 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oki03032
]
109874778 (lig1)
03400 DNA repair and recombination proteins [BR:
oki03400
]
109874778 (lig1)
Enzymes [BR:
oki01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
109874778 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
109874778 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
109874778 (lig1)
DNA replication proteins [BR:
oki03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
109874778 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
109874778 (lig1)
DNA repair and recombination proteins [BR:
oki03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
109874778 (lig1)
NER (nucleotide excision repair)
Other NER factors
109874778 (lig1)
MMR (mismatch excision repair)
Other MMR factors
109874778 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
109874778
NCBI-ProteinID:
XP_031666133
Ensembl:
ENSOKIG00005032269
LinkDB
All DBs
Position
LG30:39002309..39030274
Genome browser
AA seq
1167 aa
AA seq
DB search
MQRSISSFFQPKTGKEKESKKSDGPGKDEPVKDKPEPIKRPLKVQNGVHEEPDSPVKKFT
KRSRQILDSDDEAPAGIEQEPEDKAVQPKDEVFKAVTNPLSPASPVTSSASPTPGTPDTP
TSISPSGIPKRRTARKQFPKRKLDSRSGSEKEEEEQGQQNKRAKVEETQDSTENEEEAMD
VGGENSVDKPEVAQNDPEGKEMDEEKTKDGEKEKALYVKATEEEKGKSEKDKERSPKGQK
VKERSPKGQKVKERSPKGQKVKERSPKGQKVKERSPKGQKVKERSPKERSPKERSPKERS
PKERSPKERSPKERSPKGHKAVKDMKEEKLSESPQAKKAPTINSFFAPRKAAVKMERPEK
SEGEGKEKSEGEGKEKSEGEGKEKSEGEGKEKSEGEGKEKSEGVGKKKSEGKEKSEGKEK
SEGKEKSEGKKKSEGKEKSEGKEKSEGKEKSEGKEKSEGKEKSEGKEKSEGKEKSEGKEK
SEGKEKSEGYIKEEATGSRTTEDVKDKKGEKTAQAQYDPSRPNYHPVDHACWSRGQRVPY
LAVARTFEKIEEDSGRLRNIETLSNLLRSVIILSPEDLLCCVYLCLNQLGPAYMGLELGV
GETVLMKAVAQATGRQLDKIKAEAAEKGDLGLVAESSRNNQRMMFQPANLIAGGVFNKLK
DIGNMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCL
SPPGQDFPPAVIDAGKGMSAEKQKAWIEEKSLLLKQTYCEMPNYDVIIPVILKEGIDELP
KHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERAQIHILENGEVRIFSR
NQEDNTTKYPDIISRIHTVKNESVISCVLDTEAVAWDREKKQIQPFQVLITRKRKDVAAA
DIKVQVCVYAFDLLYLNGESLVKQPLSCRRALLKKSFQEKEGEFVFARAIDSDNTDAIAE
FLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVGDTMDLCVIGAYLGKG
KRAGTYGGFLLACYDEDNEEFQSVCKIGTGFKDEDLEQHYKFLKEHILPKPRPYYRVDQS
TEPDLWLDAVQVWEVKCADLSLSPIYKAGMGLCDPEKGISLRFPRFLRIRDDKKPEEATS
GGQIADLYRKQQVVQNQGDKADLEDYY
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagtatatcatctttctttcagcccaaaacgggcaaagagaaggagagcaaa
aaaagtgatggaccggggaaagacgagccggtgaaagacaagccagaaccaatcaaaagg
cctctcaaagttcagaatggggtccatgaggagcctgattcgccagtgaagaagttcact
aaacgcagtcgtcagatcttggacagtgatgatgaggctccagccggaatagaacaggag
ccagaggacaaggctgtgcaacccaaggatgaagtattcaaggctgttaccaaccccctg
tcccccgcctctccagtgacctcatccgcctcccccacccctggaacccctgacaccccc
acttccatctcaccctccggaatacccaaacgccgcaccgccaggaagcagttccccaag
agaaagctggacagcaggagtggcagtgaaaaggaggaggaagaacaaggacagcagaat
aaaagggcaaaggttgaggagacgcaggacagcaccgagaatgaagaggaagcgatggac
gtgggaggagagaacagtgtggataagcctgaggtggcgcagaacgacccggaggggaaa
gagatggatgaagagaagaccaaagatggagagaaggagaaagcactttatgtgaaagcg
accgaggaggaaaaaggaaaaagtgaaaaggataaagagagaagtcctaagggtcaaaag
gttaaagagagaagtcctaagggtcaaaaggttaaagagagaagtcctaagggtcaaaag
gttaaagagagaagtcctaagggtcaaaaggttaaagagagaagtcctaagggtcagaag
gttaaagagagaagtcctaaagagagaagtcctaaagagagaagtcctaaagagagaagt
cctaaagagagaagtcctaaagagagaagtcctaaagagagaagtcctaagggtcacaag
gcggtaaaggatatgaaagaagagaaattgtcagaaagcccccaagccaaaaaagccccc
accatcaacagtttctttgctcccaggaaggctgctgtaaagatggagagaccagagaag
agcgagggagagggaaaggagaagagcgagggagagggaaaggagaagagcgagggagag
ggaaaggagaagagcgagggagagggaaaggagaagagcgagggagagggaaaggagaag
agcgagggagttggaaagaagaagagcgagggaaaggagaagagcgagggaaaggagaag
agcgagggaaaggagaagagcgagggaaagaagaagagcgagggaaaggagaagagcgag
ggaaaggagaagagcgagggaaaggagaagagcgagggaaaggagaagagcgagggaaag
gagaagagcgagggaaaggagaagagcgagggaaaggagaagagcgagggaaaggagaag
agcgagggaaaggagaagagcgaggggtatataaaggaagaggctactgggtcccgtacc
acggaggacgttaaagacaagaaaggagagaagactgcccaggcccagtatgacccgtcc
agacccaactaccaccccgtagaccacgcttgctggagccggggacagagggtcccgtat
ttggctgttgcacgcacctttgaaaagattgaggaagattctggcagattgaggaacatt
gaaacattatcaaatctcctacgctctgttatcatcctctctccagaggacctgctgtgc
tgcgtctacctgtgtctcaatcagctgggtcctgcttacatggggctggagctgggagtg
ggagaaactgttctgatgaaggctgtcgcccaagctactgggcgacagttggacaaaatc
aaggcggaggctgcagagaagggggacttggggttggtggctgagagttcccgtaacaac
cagagaatgatgttccagccagccaatctgattgcagggggtgtgttcaacaaactgaaa
gacatcgggaacatgagtgggaattctgccatgaataagaagattgacatcatcaaaggt
ctctttgtagcctgtcgtttctctgaagccagatacattgtcaggtcgctggcagggaag
ctgaggattggcttggctgaacagagtgtactgtctgccctgagtcaggccgtgtgtctg
tctcctccaggacaagacttccccccggcggtgattgacgcagggaaaggaatgagtgca
gaaaaacagaaagcttggatagaagagaagagccttctcctcaaacagacttactgtgag
atgcccaactatgatgtcatcatcccagtcattctgaaggaggggattgatgaactcccc
aaacactgcaaactcactccaggtgtaccattgaggcccatgctggctcaccccaccaaa
ggtgtaggagaggtgatgaagagatttgatgaagccgccttcacctgcgagtacaagtat
gatggagaacgagcacagatccatatcttggagaacggggaagtgcgtattttcagtcgt
aaccaggaggataataccaccaaatatcctgacatcatctctcgcattcatacggtaaag
aatgagtctgtgatatcctgtgtgttggacactgaggcagtagcttgggacagagagaag
aaacagatccaaccgttccaggttctcatcacacggaagagaaaggacgtggctgcagct
gatatcaaggtccaagtgtgtgtttacgccttcgacctgctgtatctcaatggagagtct
ctagtgaagcagcccttgtcatgtcgcagggctctgttgaagaagagcttccaggagaag
gagggagagtttgtgttcgcccgcgccatcgactcagacaacacagacgccatagctgag
ttcctggagcaatcggttcgagactcctgtgagggactcatggtgaagactctggagaaa
gatgccacgtatgaaatcgccaagcgctctcacaactggctcaagctgaagaaggattat
ctggatggcgtgggggacacgatggatctgtgtgtgatcggagcgtatctggggaagggc
aagagagcagggacctacggaggctttctgctcgcctgctacgatgaggacaatgaagag
ttccagtccgtctgcaagattgggacaggtttcaaggatgaagatttggagcaacattac
aaattcttaaaggagcatattttgccaaagccccgcccctattaccgtgtggaccaatca
actgagcccgacttgtggctcgatgccgtgcaagtatgggaagtgaagtgtgccgaccta
tcgctgtcgccgatctacaaggctggcatgggattgtgtgacccagagaagggcatctct
cttcggttcccacgcttcctgaggatcagagatgataagaagccggaggaggccacttca
ggaggacagattgctgatttatacaggaagcagcaggttgttcagaatcagggtgacaaa
gctgacctcgaggactactactga
DBGET
integrated database retrieval system