KEGG   Oncorhynchus kisutch (coho salmon): 109875583
Entry
109875583         CDS       T09179                                 
Name
(RefSeq) ubiquilin-1 isoform X4
  KO
K04523  ubiquilin
Organism
oki  Oncorhynchus kisutch (coho salmon)
Pathway
oki04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:oki00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    109875583
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:oki04131]
    109875583
   03051 Proteasome [BR:oki03051]
    109875583
Membrane trafficking [BR:oki04131]
 Autophagy
  Chaperone mediated autophagy (CMA)
   Selective cargos
    109875583
Proteasome [BR:oki03051]
 Eukaryotic proteasome
  Proteasome interacting proteins (PIPs)
   UBL-UBA shuttle proteins
    109875583
SSDB
Motif
Pfam: ubiquitin STI1-HOP_DP UBA Ubiquitin_5 Rad60-SLD YukD Dsc3_N DNA_pol_phi HOIP-UBA UN_NPL4 Rad60-SLD_2
Other DBs
NCBI-GeneID: 109875583
NCBI-ProteinID: XP_020323531
Ensembl: ENSOKIG00005010547
LinkDB
Position
LG3:complement(12303453..12310808)
AA seq 577 aa
MANTVDEDEQQPFPAECKIIRVTVKTPKEKEEIAIPENSSIKQFKEQIAQRFQAQTEQLV
LIFAGKILKDADLLSHQGIYNGLTVHLVIKTQSRPPELCTSPSNSTASEQAQPEGPTSVP
GPPPVEPTSVPRPSPASSATPTFSLGLGSQGTAAAGPGLAELQRQLMSNPELLAQIMDSP
LVQGMLSNPDMMRQLIMTNPQMQLLLQHNPNITHLFNNPDVMRQTLEIARNPTMMQEMLR
NQDRALSNNALRRMSTDAQGPMLNAAAQEPIAGNPFASLTTSSPGEIQSPRVENGDPLAN
PWVPPASTDTPIGTATPTTTPTLSSNGPQTSLHNLGPAMGGRTSNSGTNTHLSSHTAMFN
SPGMQSLLQQITENPTLMHNMLSAPYMRSLLNSLSQNPDLAAQMMLNNPLFSGNPQLQQQ
MRQQLPMFLQQMQSPEMLSAMSNPRAMQALLQIQQGLQTLATEAPGFIPGVGLGGAGSDL
NPAPGFSSDPAPSDLSSGSQVVTETGQRQQQQFVRQMLDALASTNQQAQTEELLFQEQVE
QLTTMGFLNPEANLQALIATGGDVNAAVQRLLDSPSL
NT seq 1734 nt   +upstreamnt  +downstreamnt
atggctaatactgtggatgaggacgagcaacaaccattccctgctgaatgtaagatcatc
agagttactgtgaaaacacccaaggaaaaagaggaaatcgccattccagagaacagctcc
atcaaacagtttaaggagcagatagcccagcggttccaggcacaaacagagcagctggta
ctcatcttcgctgggaagatcctcaaagatgcagatctgctgagtcatcaaggcatctac
aacggactgaccgtccacctggtcatcaagacccagagcaggcctccggagttgtgtacc
tctccttccaacagcactgcctcagaacaggcccaaccagaaggccctacctctgtccct
ggaccccctcctgtagaacctacctctgtccctcgaccctctcctgcttcttcagccacc
cctaccttcagccttggtctaggcagtcaagggacagctgctgcggggcctggtctcgct
gagctgcagaggcagctgatgtccaaccctgagctgctggcccagattatggacagtccc
ttggtccagggcatgctgtccaacccagacatgatgagacagctcatcatgaccaacccc
cagatgcagctgctgctgcagcacaaccccaacatcacccacctgttcaacaaccctgac
gtcatgagacagaccctggagatagcacggaacccgaccatgatgcaggagatgttgcgc
aaccaggacagggcactaagcaacaatgccctccgcaggatgtccactgatgctcaggga
cccatgctgaatgctgctgctcaggaaccgattgcaggaaacccttttgcttctctgacg
acctcgtcaccaggggaaatccagtccccccgggtggaaaatggagaccccctcgccaac
ccctgggttccccctgcttccacagacacccctataggcactgccacacccaccactacc
cccaccctgtccagcaacggccctcagaccagcctgcacaacctaggtcccgccatggga
ggtagaacatctaacagtgggacaaacacacatttatcctctcacacagctatgttcaat
agtccgggaatgcagagtcttctgcagcagatcacggagaaccccacactgatgcacaac
atgctgtcagccccctacatgaggagcctactcaacagcctgagccagaaccctgaccta
gcagcacagatgatgctgaacaacccactgttttctgggaaccctcaactgcagcagcaa
atgagacaacaactcccaatgttcctccaacagatgcagagccctgagatgctgtcggcc
atgtccaaccccagggccatgcaggcactgctgcagatccaacagggactgcagaccctt
gccactgaggcacctggattcataccaggggttggactgggaggcgccggctcagatctt
aaccctgcccctggattttcatcagaccccgcccctagtgacctcagcagtgggtcccag
gtagtcacggaaacgggtcagcggcaacaacaacagtttgtgcgtcagatgctagacgct
ctcgctagcaccaatcagcaggctcagactgaagagctgctgttccaggagcaggtggag
cagctgacgaccatgggtttcctcaacccagaggccaacctgcaggccctcatcgctacc
gggggagacgtcaacgccgctgtacaacgactgctggactcgccatccttgtaa

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