Oncorhynchus kisutch (coho salmon): 109879155
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Entry
109879155 CDS
T09179
Name
(RefSeq) transcription factor Sox-7
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oki03000
]
109879155
Transcription factors [BR:
oki03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
109879155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Sox17_18_mid
Motif
Other DBs
NCBI-GeneID:
109879155
NCBI-ProteinID:
XP_020326934
Ensembl:
ENSOKIG00005042632
LinkDB
All DBs
Position
LG21:complement(43866385..43871234)
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AA seq
447 aa
AA seq
DB search
MAALISAYSSWPESFECSAGDGDVPDGHGSHRTRVDKASEPRIRRPMNAFMVWAKDERKR
LAVQNPDLHNAELSKMLGKSWKALTPSQKRPYVEEAERLRVQHMQDYPNYKYRPRRKKQL
KRICKRVDPGFLLGSLAGPDQNALSDPRGLCHPLGLDKDGDGVSGGDGGVGFSTLSSRSP
GPLPGVRSFRDVPSSSSSNSFDTYPYGLPTPPEMSPLDHDHPSYYPSSSSSSSSVSSPEE
RHQHRQGQTPGGGGGGPMCLSPSSYHPDYTPTQTSIHCGGSHSHLTHLSHLSQTQSGGLI
PGHPLTYYNPSSWSSQLQVHPGLNHPHLRHLSPGHHQQHHLGQLSPPPEQNHSHLETLDQ
LSQVELLGEVDRDEFDQYLNSTVAGAAAAGVGVFRSEQEGGTMMVTGHIQVTSASAPSSE
SSVVGESSLISVLADATAAYYNNYGIS
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggctgcactgatcagcgcgtactcgtcttggccggagagctttgagtgctcggcggga
gatggagacgtgcccgacggacatggctcacacagaactcgcgtggacaaggcgtcggag
ccgcgcatcaggcggcccatgaatgcgttcatggtctgggccaaagatgagaggaagcgc
ctggctgtccaaaacccagacctgcacaacgcagagctcagtaaaatgctaggcaagtcg
tggaaggcgctgaccccctctcagaagcgtccctacgtggaggaagccgagaggctgcgg
gtgcagcacatgcaggactaccccaactataagtaccggcctcgccggaagaagcagcta
aaacgcatctgtaaacgcgtggaccccggcttcctgctgggcagcctggcgggccccgac
cagaatgccttgtccgacccccggggcctctgccaccccttgggtttggataaggacggg
gatggggttagtggtggtgatggaggtgttgggttctcgaccctctcttcccgcagccca
gggcctctacctggggttagatccttcagagacgtaccgtccagctccagctccaacagc
ttcgacacctatccctacggcctccccaccccgcctgagatgtcccctctggatcacgac
cacccctcctactacccttcctcctcttcctcctcctcatccgtctcttcccccgaggag
cgccaccagcaccgtcagggtcagacccccggaggtggaggtgggggtcccatgtgtctc
agtccttcatcctaccaccctgactacacccccactcagacttccattcactgtggtggc
tcccactcccacctgacccatctctcccacttgtcccagacccagtccggaggcctcatc
cctgggcatcctctgacctactacaacccatcctcctggtcctcccagctccaggtccac
ccgggcctcaatcaccctcacttaaggcacctttccccaggtcaccaccaacagcaccac
ttgggtcagctatcccctcctcccgagcagaaccacagtcatctggagactttggaccag
ctgagtcaggtagagcttctaggggaggtcgaccgcgatgagttcgaccagtacctgaac
tcgacggtggccggcgctgcagcagcaggggtgggggtgttccgttccgaacaggaagga
ggaacgatgatggtgaccggtcacatccaggtgacatcggcctcagctccgtcttctgag
agcagcgtcgtcggggaatccagcctgatctctgtgctggcggacgccacggcagcatac
tacaacaactacggcatctcttag
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