Oncorhynchus kisutch (coho salmon): 109882817
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Entry
109882817 CDS
T09179
Symbol
npc1l1
Name
(RefSeq) NPC1-like intracellular cholesterol transporter 1
KO
K14461
Niemann-Pick C1-like protein 1
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
oki02000
]
109882817 (npc1l1)
Transporters [BR:
oki02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
109882817 (npc1l1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
NPC1_N
Sterol-sensing
MMPL
Folate_rec
BPD_transp_1_N
Motif
Other DBs
NCBI-GeneID:
109882817
NCBI-ProteinID:
XP_020330495
Ensembl:
ENSOKIG00005017077
LinkDB
All DBs
Position
LG3:complement(40247811..40259225)
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AA seq
1347 aa
AA seq
DB search
MGRPTMSRATALLTLLACLVVLEARHEPGYCAFYEECGRNPTVVGSLLPPIIPCLNYSRA
RALEGEHYQQLKKVCPMLDRGEGSTTACCSIKQLKSLEMSLMLSKAVLMRCPSCADNFAH
LHCINTCSPDQTTTINVTRTMNITTLGIVKEAVVGYQAYLSTSFADKSFESCKNVRIPAT
GGYAIATMCGRYGSALCTAQRWYDFQGDSSNGLAPLDIDFRLIPEGVTEGIPDGVVPYAG
RALGCNEMTPTGAEVCSCQDCQASCPVVPSPPPPAEPFTIGGVDGYLVLCVIFLCVLILA
FLLFVLSTYLLRKEEGKDSEKGKGKRKGMDKNGNNVSERLIEPWEVTCTDKNSLATQEFL
GSGFRAWGTLVASHPLKVLLASAVVTAAFATGLMHIELTTDPVQLWSAPNSRARMEKDFH
DKHFDPFFRTNQMILTAPGRPGHFYDSLLFGKQNFSGIIAKDLILELLKLQRKIQNIEFW
SNDLNRMASLKDVCFAPLNPSNPSLTDCAVNSLPQYFQNSVANLNAKVNMTELGVTKEVD
WRDHFIYCVNSPLSFKDITDLQLSCMADYGAPVFPFLAVGGYEKEGYTTAEALILTFSLN
NYPRDNIKFKVALEWEQRFLDIVQEYQKSPGNPFTFAYMAERSLEDEINRTTAEDIPIFM
ISYAVIFVYIAVALGEYTSFSRILVDSKFLVGLGGILVVGCSVLASMGFYAWIGIPSSLI
ILQVVPFLVLAVGADNIFIFVLEYQRDARRPGEKREERIGRVLGNVAPSMLLCSLSESVC
FFLGALSTMPAVKSFALYAALAVLMDFVLQMTAFVALLSLDARRQDGNRCELACCVTVKT
TAPTKPNEGFLLPAMRKYYAPVLLHPVTRVIVIVVFIFMFISSIYLMFYVTVGLDQELAM
PQGSYMLEYFKYLYAYFEVGVPTYFVTTKGFNFTSIAGMNATCSSVGCDPFSLTQKIQYA
TEYPDLSYMAIPANSWVDDFIDWLNPGSKCCRLYSIGPNKGKFCPASESAFLCGQKCMKT
PINGVLRPDKEQFNRFLPDFLGNRPDLQCPKGGLGAYDKAVITDESGEIIATRFMAYHTA
LTTSKEFTAALKIARELAHNITLSMRSIPGTSQDFEVFPYTVTYVFYEQYLTIVSEGLFN
ISLCLLPTFVVCCLLLGMDLRSGALNLLTIIMITVDTVGVMTLWGIDYNAVALINLVTAV
GISVEFVSHMTRSFAMSIQPTHVERAKEATATMGSAVFAGVAMTNLPGIVVLAFAKAQLI
QIFFFRLNLVITLLGMAHGLIFLPVLLSYFGPGVNKAVLLRLQQAKAQELELSSHAKNIY
DNIGYEDQESSPNPDTTPHHPVRTPHH
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgggtagacccactatgagccgtgccactgccctgctcacactcctggcctgtctggtt
gtcttagaggcccgtcatgagccaggatactgtgccttctacgaggagtgtggtagaaac
ccaacggtggtgggatcactcctcccccccataatcccctgcctcaactacagtcgtgcc
cgagccctcgagggggagcactaccagcaactcaaaaaggtgtgccccatgctggaccga
ggagagggcagcaccaccgcctgctgctctataaagcagctcaagtccctggaaatgagc
ctgatgctgtccaaggcagtgctcatgcgctgcccctcctgtgctgacaactttgcccac
ctccactgcatcaacacctgcagccctgatcagaccacaaccattaacgtgacacgcacc
atgaacatcaccaccttggggattgtcaaagaggctgtggtgggttaccaggcctacttg
tccacctcgtttgccgacaaatcctttgagtcctgcaagaacgtgaggattcccgccacg
ggtgggtatgccatcgctaccatgtgtggacgctatggctcagcactgtgtacggctcag
cgctggtatgacttccagggagactccagtaatggcctggccccactggacatcgacttc
aggctgatcccagaaggggtcaccgaggggatacccgatggggtagtgccttacgctggg
agggcgctggggtgtaacgagatgaccccaacaggggcagaggtttgctcctgccaggac
tgccaggcctcgtgcccggtcgtaccctctcccccaccccccgcagaacccttcactatc
gggggggtggacggctacctggtgctatgtgtgatcttcctctgcgttctcattctagcc
ttcctgctctttgtgctctccacctacctcctgaggaaggaagagggcaaggactctgag
aaagggaaaggaaagaggaaagggatggataagaatgggaacaacgtgagtgagaggctg
attgaaccgtgggaggtgacgtgtacagacaagaacagcctggctactcaggagttcctg
ggttctgggttccgggcatggggcaccctcgtcgcctcacaccccctcaaggtgctgcta
gcgtcggctgtggtcacagctgccttcgccacaggactcatgcacattgaactgaccacc
gacccggtccagctgtggtcagccccaaacagccgtgcccgtatggagaaggacttccat
gacaagcactttgacccattctttagaaccaaccagatgatcctaacagcgccgggccga
cctggtcacttctacgactcgttgctgttcgggaagcagaacttcagtggaatcattgcc
aaagacctgatcctggaacttctaaagctgcagcgaaagattcagaacattgagttctgg
tcgaatgatctgaaccgtatggcaagtctgaaggatgtgtgcttcgcacccctcaacccc
tccaacccctccctgactgactgtgctgtcaacagcctgccccagtacttccagaacagt
gtggccaacctcaacgctaaagtcaacatgacggagctaggagtgaccaaggaggtggac
tggagagaccacttcatctactgcgtcaactctcccctgtcgttcaaagacatcactgac
ctgcagttgagctgcatggctgattatggagcaccagtcttccccttcctcgcagtggga
ggatacgagaaggaaggctacactacagcagaagctctcatcctgacattctccctcaat
aactaccctcgagataacattaagttcaaggtggccctggagtgggagcaaaggttcctg
gacatagtccaagagtaccagaagagtccaggaaacccgttcacctttgcgtacatggct
gagaggtcactggaggatgagattaacaggacgacagcggaggacatccccatcttcatg
atcagctatgctgttatctttgtgtacatcgctgtggctctgggggagtacacctccttc
agtcgaatactggtggactcgaagttcctggttggtctgggtggtatcctggtggtgggc
tgctctgtcctggcctccatgggtttctacgcctggatcggtatcccctcctctctgatc
atcctccaggttgtccccttcctggtgctggccgtaggagctgacaacatctttatcttc
gtcctggagtaccagagggacgcacggaggccaggcgagaagagggaggagcggatcgga
cgtgtccttggaaatgtcgctcccagcatgctcctgtgctctctctccgagtctgtctgc
ttcttcctgggcgctctgagcaccatgcctgctgtcaagtcctttgctctgtacgctgcc
ctggctgtgctcatggacttcgtgctgcagatgacggccttcgtggcgctgctgtccctg
gacgccagacggcaggacgggaaccgctgcgagctggcctgctgcgtcaccgtcaagacc
acggcccccaccaaacccaacgagggtttccttctgcccgccatgaggaaatactatgcc
cccgtcctcctccaccccgtcaccagggtcatagtgattgttgtattcatctttatgttc
atctcctccatctacctgatgttctatgtgacagtgggtctggatcaggagctggctatg
ccccagggttcctacatgttggagtatttcaagtacctgtatgcgtactttgaggtgggc
gtcccaacctattttgtcacgacaaagggctttaacttcaccagcatagcgggtatgaat
gcaacctgttccagtgtgggctgtgaccccttctctctcactcagaagatccagtacgcc
actgaataccctgacctatcttacatggccatcccagcaaactcgtgggtggacgacttc
attgactggctaaaccctggatccaaatgctgtcggctctattccatcggtcctaacaaa
gggaaattctgtcccgcgagcgaatcggccttcctgtgtgggcagaagtgtatgaagact
cctattaacggtgtactgaggcccgacaaggagcaattcaaccgcttcctaccagacttc
ctaggcaacaggcccgacctgcagtgccctaagggaggtcttggagcctatgataaggct
gtgatcacagatgagagtggagaaattatagccaccaggttcatggcgtaccacacggcc
ctgaccacctccaaggagttcactgcagctctaaaaatagccagagagctggcccacaac
atcaccctcagcatgagatccatacctggcacatcccaggactttgaggtcttcccctac
acggtgacctatgtgttctatgaacagtacctgaccattgtgtctgagggactgtttaac
atctccctgtgcctactgccaacctttgtggtgtgctgtctgctgctgggcatggacctg
cgctccggcgctctcaacctcctcaccatcatcatgatcaccgtggataccgtgggcgtc
atgacactgtggggcatcgactacaacgcagtggctcttatcaacctggtcacggcggtg
ggtatctctgtggagtttgtatctcacatgacacgatcctttgccatgagcatccagcct
acacatgtagagagggccaaggaggctactgctactatgggcagtgcggtgtttgctggc
gtcgccatgacgaacctgcctggcatagttgtgttggcatttgccaaagcccagctcatc
cagatattcttcttccgtttaaacctggttatcactctgctgggcatggcccatggcctc
atattcctgcccgtgctgctcagctactttggtcctggagtgaataaagcagtgttgcta
cggctacagcaggccaaggcccaggagctggagctgagtagccatgccaagaacatctac
gacaacatcggctatgaagaccaggagagcagccccaacccagacaccaccccccatcac
cccgtacgaacccctcaccactga
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