Oncorhynchus kisutch (coho salmon): 109891001
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Entry
109891001 CDS
T09179
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
oki03036
]
109891001
Chromosome and associated proteins [BR:
oki03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
109891001
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
DUF3437
MUN
Motif
Other DBs
NCBI-GeneID:
109891001
NCBI-ProteinID:
XP_031683263
Ensembl:
ENSOKIG00005015015
LinkDB
All DBs
Position
LG1:complement(57107074..57208465)
Genome browser
AA seq
3100 aa
AA seq
DB search
MAFCVLGNKCGGKTQCSAADGLTDAATVKRNMKIQNKDKQMSTIHLLKHTPATAASTATD
QNAQTPFPSGPLGSKDQIRVLGGGQINHCMSHAKHPRMGEAGTSSGSLSPCAPSSPLNSE
EDDGGGGRRAKKKKRKKKDKKGEPGAAWQHKGSEKDNKPKKKRQQKEGKELLPCKSKAPK
KLEVKVKEVKSPKEAPKEVKRGRKPKVQVPPLAKPPAECKSAPSPPRQRGRKPREQVLQG
PVPVEKKKKGKRKSVAVLQEAGESDDAASLSTLVVGGEESIDPLDNTKRRSGRQVKRRKY
NEDLDFKVVDDDGETIAVLGTGRIPALNAATLAWQAEEPPEDEANIIEKILSVRTAKKEA
SPEETPEESEEFYVKYRNFSYLHCKWATLEDLEKDPRIHQKIKRFRTKQAQMKHIFVEPD
EDLFNPDYIEVDRILEVAITTDTETGEEVTHYLVKWCSLSYEEATWELQEDVDPGKIREF
EEIKRIPEYKFVERPQPDKWQKLDKSKDYRNGNQLREYQLEGMNWLLFNWYNRKNCILAD
EMGLGKTIQSITFLFEMFSMGLRGPFLIIAPLSTITNWEREFRTWTEINVIVYHGSQISR
QMIHQYEMYHKDQQGNIVSGGYKFHGVITTFEMIMADCPELKKIHWRCVVIDEAHRLKNR
NCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPLQFPSESLFLEEFGDLKTEE
QVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNMQKKYYRAILEKNFTFLAKGA
NQHNMPNLINTMMELRKCCNHPYLIKGAEEKILDSFRKTHSPDAWDFNLQAMIQAAGKLV
LIDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFC
KVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR
LITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGMQQMTKIEVEDLLRKGAYGALMD
EEDEGSKFCEEDIDQILQRRTQTITIETEGKGSTFAKASFVSSGNRTDISLDDPNFWQKW
AKIAELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEERPCRTRRLS
ERNRHYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWQLAECDIEVLCRSLLVYCVRHYK
GDDKIKSFIWDLITPAKDGHKQDLQNHSAGLSAPVPRGRKGKKLKNQLSVPEMKHADWLV
NCNPEVVLHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAAAQFLEGIPASKLEVALP
DIDYIEIPAGWWDAEADKSLLIGVHKHGYERYNAMRADPELCFLERVGMPDVTALSAEQS
GGEVMADLTDSNCKSDDVKDDPESKQEEGEEGVERVDNKDETSSSNDAMDKHDNVVQDIG
HRVQEGFVQEELGQEGVELKGRPLWPAGPNLTARLRRLITAYQRFMRREPLRHDFLLPGA
SPGPMSWQLGEELRHCTATAAKPDPLFLEWQRRWVMMSEQRWTRREQADFYRTVSSFGVV
YDPEKKTFDWSQFRSFARLERKTDESLERYFSSFVSMCRTACRLPPRKDEGPLDHNLFVE
PITEERAARTLYRIELLRKVREQVLRHLLLGPRLQLCRPSLYLPVWWECGKHDRDLLIGA
ARHGLSRTDYYILNDPQLSFLDAHRNYVQKENHKGYHPGVHHAGMTPSPHHHPCCLYETG
LGQCHSPQPPEYHHPATPSSSIHAHSHPHIHVHGHPPEIVGTDPGGSLGMVSGPRESFLD
CPPLDESLELASLQQEGLASDSLHCKSAKEAFNGFPFNSAQGGQSMLNSYGVQGELNGEQ
STEMDPIISGKLRSDVLVGEQGSSEETGLMAPSLELDQELQAPWESTDHAGAADIFNDAD
PILGAPALETEFLDPEEQPEDGRREDRAGGVLDDCLGIPPSRSDPGEPLPSSFMLFKDIG
VSEEEPAEEHTDLSASCPSPYVPPPPLSLSHMTLYPHHQGDAEEPEETPNSDAIAHMPSS
KEREAEDDVAFEFDKEMSVDSLYLVGPEQGLEASGISCEDSHQEEPFEGACDGTGMGSPV
ESFEAALEGPREETLERDMALGPGEEGLLEGQFEEPLEMSAMDPQEEEPVEGPLEDSCKD
PAPEEPFAGPLEERYDVEPEGASEGTAEAESTFSEHTLPTVDATDSLPPSPSVPTSQPEP
QIKLEFPLDPESSESKSDILEPDSTVLTPKLEQTKGLLEVKDEIEERPQKRGKTPASVVD
SYVEVARFAAPMSMCEMPDSLQDAREPTIAQLLQEKALYSFSEWPKDRVIINRLDSICHA
ILKGKWPSSSQQYDSPSSLANTCVPNSVHQRAGFISTRVQPSQNLNFNIPAPSVTRLPKY
KQRGAGECSPGGWRLTSLPLLQERLVAPPYLPELKRGRRSFEYEGVVLSKQGHSGEKMPL
TVPHQGGALLLNGWQEAAMDLSKAGDLGIGGEVAATVDHMSHQVHPSSHKLPAMGAMQSV
IQSAMQGSVGVDMAGILQAGLIHPVTGQIVNGNLRRDDAFMRRRRGRRRNVEAVDMGFVK
SRGMHVPEQQGRVEVISHSAVSSTSSPPECPPGPSTPTQPEVVAIDREAANKGLMEWLRQ
NPNYNMELPTFAPSPGAAMLHSFVERPKQRRHRCKDPTKLDVNSLTGEERVPVVHRSTGR
RLGGAMAPAIKELSRWLDANTEYYVAPDWADVVKHSGFLPEGKYTRILTEPVCRDQGPRR
RGRRPRSEMPKPLLSESPMGPLFMNGSLIGSMDLVSLQNLRNVQGIPLTGLMGFPHGFAV
SAGEDAKNGLSMLPMMLHGIHGSPHMFSVQGLMGQPPTSSAPTSSAAAVSTTTASSAASS
PSRGPSQASSSTQADGSGMQSDGERKREDKQSTEEKQLGAIGSHSIAAITTAAASSSSGV
SSSSGSHLAFNPFLVPGLSHGLLYPHMFLPHGGIMALPGMPPTESSGSPKRKKKRTREEG
VVEEASSHSHLQTDSGPPKTPSDGQTGESTVDQAGPEAREHQMEDNVEEITGHDSHASPE
VKPEKSIEEERETKENRVMEEEKLPGDEEEREPRGAQDSQ
NT seq
9303 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttgtgtccttggaaataaatgcgggggtaaaacccagtgttcggcagctgat
ggcctgactgatgcagcgacggtgaagagaaacatgaagatacaaaataaggacaaacag
atgtctaccatccacttactaaagcacactccagctacagcagcctctactgccactgac
caaaatgcacaaactccatttcccagcggacctttaggctccaaggaccagatcagggtc
ctaggaggcgggcagatcaatcactgcatgtcccacgccaagcaccccaggatgggcgag
gcaggcactagttcaggcagcctcagcccctgcgccccctcgtcacccctcaatagcgag
gaggacgatggaggaggcgggcggcgggcgaagaagaagaaacgaaagaaaaaagacaaa
aagggcgagcctggtgccgcctggcagcacaagggctcggagaaggacaacaaaccaaag
aaaaagaggcagcagaaagaagggaaggagctgctgccatgcaagtctaaggcgcccaag
aagttggaggtcaaggtgaaggaggtaaagtcgccgaaagaggcaccaaaagaggtgaag
agagggaggaaacccaaggtgcaggtcccgcccctggccaagccccctgcagaatgcaag
agcgccccatctcctcccaggcagaggggccgcaaacccagagagcaagtcctacaaggg
ccggtaccagtggagaagaagaaaaagggcaagaggaaaagcgtggctgtcctccaggag
gctggagagagcgacgacgcggcctccctgtccacgctggtcgtggggggagaggagagc
atcgacccccttgacaacactaagcgtcgctcagggcgacaggtgaagcgcagaaagtac
aacgaggacctggacttcaaggtggtagatgatgacggggagaccatcgccgtgctgggg
acaggccgtatccctgccctcaacgctgccactctcgcctggcaggctgaggagccccct
gaagatgaggcaaacatcattgagaaaatcctgtcggttcgaactgcgaagaaagaggca
tcccctgaggagacacctgaggagtcagaggagttctatgtcaagtacagaaatttctcc
tacctgcattgtaagtgggcaaccttagaggatttggagaaggaccctcgcatacaccaa
aaaatcaagcgcttcaggactaagcaggcccaaatgaagcacatatttgttgagcctgat
gaagacctctttaaccctgactacatagaggtggatcgaattctggaggtggccatcact
acagacacagagacaggagaggaggtgacacactacctagtgaaatggtgctccctgtcc
tatgaggaggctacatgggagcttcaagaggacgtggacccggggaagattcgggagttc
gaggagatcaagaggatccctgaatacaaatttgtggagagaccgcagccagacaagtgg
cagaagctggacaagtccaaagactaccgaaatgggaatcagctgagagagtaccagctg
gaaggcatgaactggctgctcttcaactggtacaacaggaagaactgcatcctggctgac
gagatgggcctggggaagaccatccagtccatcaccttcctcttcgagatgttttccatg
ggcctgcgggggcccttcctcatcatcgcccccctctccaccatcaccaattgggagagg
gagttccgtacctggacggagatcaatgtcatcgtctaccacggcagccagatcagccgc
cagatgatccaccagtacgagatgtaccacaaggaccagcagggaaatatagtgtcgggc
gggtacaagttccacggggtgatcaccacctttgagatgatcatggccgactgtccagag
ctgaagaagatccactggcgctgcgtggtcatcgacgaagcccaccgcctcaaaaaccgc
aactgtaaactcctggagggcctcaagctcatgaacctggaacacaaagtcctcctgacg
ggtacccctctgcagaactcggtggaggagctcttcagtcttctcaacttcctggagccc
ctacagttcccctctgagagcctcttcctagaggagtttggagatctgaagactgaggaa
caggtgaagaagctgcaggccatcctgaagcccatgatgctgcggcggctgaaggacgac
gtggagaagaacctggcacccaaggaggagaccatcattgaggtggagctcaccaacatg
cagaagaagtactaccgtgccatccttgagaagaacttcaccttcctggccaagggggcc
aaccagcataacatgcccaacctcatcaacaccatgatggagctgcggaagtgctgcaac
cacccctacctgatcaaaggtgcggaggagaagatcctggatagcttcaggaaaacacac
agccccgatgcctgggacttcaacctccaggccatgatccaggcggcggggaagctggtg
ctcatcgacaaactgctgcctaagctgattgctggcggccacaaggtgctggtcttctcc
cagatggtgcgctgcctggatatcctggaggactacctcatccagaggaggtacacctat
gagcgcatcgatggcagagtgcgggggaacctgcgccaggctgcgattgacaggttctgt
aaggtggactcagaccgctttgtgttcctgctgtgtactcgtgctgggggcctaggcatc
aacctgaccgctgcagacacctgcatcatcttcgactcggattggaacccccagaatgac
ctacaggcccaagctcgctgccaccgcatcggccagagtaaagcagtgaaggtgtataga
ctgatcactaggaactcctatgagagggagatgtttgacaaagccagtctgaagctgggt
ctagacaaggccgtgctgcaggacatcaatcgaaagggcagcctcaatgggatgcagcag
atgaccaagattgaggtggaggacctgctgaggaagggggcatatggagcactgatggac
gaggaggacgagggctccaagttctgcgaggaggacatcgaccagatcctgcagcgccgc
acacaaaccatcaccattgagacagagggcaagggctccaccttcgccaaggccagcttt
gtatcttctggaaacagaactgatatttccctggacgatcccaacttctggcagaaatgg
gccaaaatagcagagctggagattgattccaaagcagagaaggagagcctggtgattgac
acgcctcgtgtgaggaagcagacacgccactacaactcgttcgaggatgacgagctgatg
gagttctcagagctggacagcgactcagaagagaggccctgtcgcacccgccgcctcagc
gagaggaacagacactacctccgcgctgagtgcttccgcgtcgagaagaacctgctcata
tttggctggggtcgctggaaggacatcctgacccacgggcgcttcaagtggcaactggcc
gaatgtgacattgaggtgctgtgccggtcgctgctggtctactgcgtgcgccactacaag
ggcgacgacaagatcaagagctttatctgggacctcatcacacccgccaaggatggccat
aaacaggacttgcagaaccactctgcaggtctgtcggccccagtgcccaggggacgcaag
ggtaagaaattaaagaaccagctgagtgtgcctgagatgaagcatgcagactggctggtc
aactgcaacccagaggtggtgctgcatgacgacagctacaaaaaacacctcaaacagcac
tgcaacaaggtacttctgagggtgaggatgctgtactacctgaaggcggaggtcctggga
gaggctgctgcccagttcctggagggtattcctgccagtaaactggaggtggcactgcct
gacatcgactacatcgagatcccagctggctggtgggatgcagaggcagataagtctctc
ctcataggggtacacaaacacgggtacgagcggtacaacgccatgcgggccgacccagag
ctgtgtttcttggagagggtgggcatgcctgatgtcacagcgctctcagccgagcagagt
ggaggagaggtgatggctgacctcactgacagtaattgcaaaagtgatgacgtgaaagac
gatcctgaaagcaagcaagaggagggagaggagggagtggaaagggttgataataaggat
gaaaccagctccagcaatgatgcaatggacaagcatgacaatgttgttcaagacatagga
cacagggtccaggagggctttgtccaggaagaattgggccaggagggcgtggagctgaag
ggtcgccctctgtggcccgccggccctaatcttactgccaggctgcgtcgcctcatcaca
gcttaccagcgcttcatgcggcgcgagcccctgcgtcatgacttcttgctgccaggggca
agcccgggaccgatgtcctggcaactgggggaggagcttaggcactgcacggcaaccgct
gccaaacctgaccctctcttcctggagtggcagagaaggtgggtgatgatgtcagagcaa
aggtggacacggcgtgaacaagcagatttctaccgcaccgtgtcgtcgttcggcgtggtg
tacgacccggagaagaaaacctttgactggagtcagttccgctccttcgcccggctggag
aggaaaacggacgagagcctggagagatacttcagcagctttgtgtccatgtgccgcacc
gcctgcagattgccccccaggaaggacgaagggcctctggaccacaatctgtttgtagag
cccatcacggaggagcgagcagcacgcactctctaccgcatcgaactgctgcgcaaggtc
agagagcaggtgctgcgccacctgctgctgggcccacggctgcaactgtgtcggcccagc
ctttacctgcccgtgtggtgggagtgtggcaaacacgaccgcgacctcctgattggggca
gcccgtcacggtcttagccgcaccgactactacatcctcaacgacccacaactctccttc
ctggatgcccaccgcaactacgtccagaaggaaaatcacaagggctaccatcctggggtg
caccacgcaggcatgacaccctcgccccaccaccacccctgctgcctgtacgaaacgggc
ctcggccaatgccactctccccagccgccggagtaccaccacccagccaccccctcctcg
tcgatccatgcccattctcacccacacatccacgtccatggtcacccgccagagatagtg
ggcacagatcccgggggcagcctaggtatggtgtctgggcccagggagagcttcctggac
tgcccccctctggatgagtccttagagttggcctcactgcagcaagagggcctggcctca
gattccctccattgcaagtctgccaaggaggccttcaacgggtttcccttcaactcagcg
cagggtggccagagcatgctcaactcgtatggtgtgcagggggagctgaatggcgagcag
tcgaccgaaatggaccctatcatctcgggcaagctgcgcagcgacgtgttggtgggggag
cagggctcctctgaggagacaggcctcatggcgccctcgctggagctggaccaggagctg
caggcgccctgggagagcacggaccacgccggcgccgcagacattttcaacgacgctgac
cctatcctgggggcgcccgcccttgagacggagttcctggaccccgaagagcagccggaa
gatgggagaagggaggacagagcagggggagtgcttgatgactgcctgggtatccccccc
tcccggagcgacccaggggaaccgctaccctccagttttatgctgttcaaggacatcggc
gttagcgaggaggagcctgctgaggagcacaccgacctctccgcaagctgcccttcaccc
tacgtcccccctccgcccctgtcgctgtcccatatgaccttgtacccccaccaccagggt
gatgccgaggagccagaggagacgccgaactcggacgccatcgcccacatgcccagctcc
aaggagagagaggcagaggatgatgtggcctttgagtttgacaaagagatgtctgtggac
agtctgtatctggtggggccagagcagggcctggaagcatcaggtatatcatgcgaggac
tctcaccaagaggagcccttcgagggtgcctgcgatgggacgggaatgggatctccagta
gagtcatttgaggctgctctagaggggccaagggaagagactttagaaagggacatggcc
ttagggccaggggaggaggggcttctagaagggcagtttgaagaacccttggagatgtca
gccatggatccccaggaggaggaaccagtggaggggcctctggaagactcttgtaaagac
ccagcaccagaagaaccattcgcagggccattggaagagcgttacgacgtagaaccagaa
ggggcctccgaggggactgccgaagcagagagcactttcagcgaacacacactacccact
gttgacgcaacagactctctgcccccgtccccctcagtccccacgtcccagcctgagcca
cagatcaaactggagttccctctggacccagagagctctgagagcaagtcggacatcctg
gagcctgacagcactgtcctcacgcccaaactggagcagacaaagggactgctggaagtg
aaggacgagatcgaggaaaggccccaaaaaagggggaaaactccagcctccgtggtggac
agctatgtagaggtggcacggtttgcagcccccatgtccatgtgtgagatgcctgacagt
ctgcaggacgcgagggagcctaccatcgcccaactgctgcaggagaaagccctctactcc
ttctctgagtggccaaaggaccgggtgatcatcaaccgcctggacagtatatgtcatgcc
atcttgaaggggaagtggccctcgtccagccagcagtatgactctcccagctctctggca
aacacctgtgtgcccaacagtgtgcaccagagggctggcttcatctcaaccagggtacag
ccatcccagaaccttaacttcaacatcccagccccttctgtcacccgcctgcccaagtac
aagcaaagaggtgccggagaatgcagcccaggaggctggaggttgacatccttgcctctc
ttgcaggagaggctggtggcaccgccctatctgcccgaactaaagcggggtaggcggtcg
tttgagtatgagggcgtggtgctcagcaagcagggccactccggggagaagatgccccta
acggtgccgcaccaaggcggggcgctgctgctcaacggctggcaggaggcggccatggac
ctctcaaaggccggggatctgggcattgggggcgaagttgcagccactgtagaccacatg
agccaccaggtccaccctagttcgcacaaactgcctgccatgggcgccatgcagagtgtc
attcagagtgccatgcagggctcggtgggagtagacatggctgggatcctgcaggcaggt
ctcatccaccccgtcaccggccaaatcgtcaatggcaacctgaggcgcgacgatgccttc
atgcgccgaaggcgaggcagacggagaaacgtggaggctgtcgacatggggttcgtcaag
agcagaggaatgcacgtgccggaacaacagggtagagtagaagtcatcagccattctgcg
gtgtcgtccacctcctccccaccagagtgccccccgggaccctccacacccacccagcca
gaggtggtggccatcgacagagaggctgccaacaagggcctgatggaatggctgcggcag
aatcctaactacaacatggaactgcccacttttgcaccgtctcctggcgcagcgatgttg
cacagctttgtggagcggcccaaacagcggagacatcgctgcaaagaccccaccaagctg
gacgtcaactccctaacaggggaggagagggtgcccgtggtccacagaagcactggccgc
aggcttgggggtgctatggctccagcaatcaaggagctctcccgatggctggacgcgaat
actgagtactacgtggcacccgactgggcagatgttgtgaaacactctggctttcttccc
gagggaaagtacacgcgcatactcacagagcccgtgtgccgcgaccaagggccccgccgc
cggggccgtcgtcctcgcagcgagatgcccaagcccctcctctcggagtcacccatgggc
ccactcttcatgaacggcagcctgatcggcagcatggacttggtcagcctccagaacctc
cgcaatgtccagggcatcccactcacgggcctgatgggattcccccatggcttcgcagtg
tccgctggtgaagatgccaagaacggcctgagcatgcttcccatgatgctacatggcata
catggctccccccacatgttcagtgttcaggggctgatggggcagccgcccacaagctcc
gctcccacctcctcagcggctgcagttagcaccactacggcttcctccgcggccagtagc
ccctcacgaggccccagccaggcgtcttcgagcacacaggcagatggctccggcatgcag
tctgacggagagagaaagagggaggacaagcagtcgacagaggaaaagcagctaggtgcg
ataggcagccacagcatcgcagccatcaccactgcggcggccagcagcagcagtggcgtc
agcagtagcagtggcagccacctggccttcaaccctttccttgttccagggttgtcccat
ggactgctgtaccctcacatgttcctcccacacgggggcatcatggcgctgccaggcatg
ccgcccacagagtcctccggcagccctaagaggaagaagaaaagaacaagggaggaaggg
gtggtggaggaggcaagcagccacagccacttacagacagacagtgggcctccgaaaaca
cccagcgatggtcagactggggagagcacggttgaccaggccgggccggaggctagggag
catcagatggaggacaacgttgaggagataacgggacacgactcccatgcttctccagaa
gtcaaaccagagaagagcattgaagaggagagagagacaaaggagaatagagtgatggag
gaggaaaaactgcctggagatgaggaggagagagagccaaggggggcacaggattcacaa
tag
DBGET
integrated database retrieval system
