Oncorhynchus kisutch (coho salmon): 109891411
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Entry
109891411 CDS
T09179
Symbol
helz2
Name
(RefSeq) helicase with zinc finger domain 2 isoform X1
KO
K25165
3'-5' exoribonuclease HELZ2 [EC:
3.1.13.1
5.6.2.6
]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oki03019
]
109891411 (helz2)
Enzymes [BR:
oki01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
109891411 (helz2)
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109891411 (helz2)
Messenger RNA biogenesis [BR:
oki03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
109891411 (helz2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
RNB
AAA_30
AAA_19
ResIII
AAA_22
UvrD_C_2
nSTAND3
UvrD_C
PhoH
OB_Dis3
UvrD-helicase
SLFN-g3_helicase
DEAD
AAA_16
AAA
Rrp44_CSD1
zf-met
ATPase
zf-C2H2_jaz
AAA_24
DUF4335
Motif
Other DBs
NCBI-GeneID:
109891411
NCBI-ProteinID:
XP_020339503
Ensembl:
ENSOKIG00005043991
LinkDB
All DBs
Position
LG5:complement(64401986..64426153)
Genome browser
AA seq
2716 aa
AA seq
DB search
MTTKERIQRQFPGTFMELCETCLHHRPRQFSRKGINLKCNSRHRHVWKATLVLYDKKNTR
LYEEVRPLPILPHLNISSWLYCKYVVNGEPCLHGAHRCWFAHSKVEMTVWNAESQEGFVR
AELLQAVQKYQPVVAAASRSLPQHFCKACDLWFPSWGDFQNHLNTFNHIKRTNEYNNETT
TEWKYRDPPQTNQAYKLCERRASTCELGSNCVDAHSAEELQEWRTRDKTDRKAVIAAEEQ
GLLSYQGNLLREYKDIIKKADIMSEAVSGVIISCDKDMMISGQRENVPLTWKFRIQSEKL
LAHVSLLKQEPGASFSLVENSPEPCTYSTGESFCNSDMTYDITVSFKSNNPGLYEQWLVF
DFDTRPVLLQKLKVNVGKEPSIQLVVPPEDDIHLSLNQERWHQGNRDIIPYMEKTKAQEK
LLTEYEPQICTPYKPLDDRNMPINHQNYKERMHSFLYTEEQAEDQVVSRLNVQTTITLSV
TLEATVDDPQFGMKIAPLGELFCAVSVPYNLTPDTPEGLMLRRSIQSALIAPVSSDNQSH
KVYEAIILKDTTSEYKIHLQLSKRCCSDLKLQNNETCEMEVQFQLNRLRFCEMHKAIDLL
PDTERVLPDFRNCIVPVSKTQQNYNLNAKQQAAMEFIIGDTDGAGSVSPLLIYGPFGTGK
TLTLAMAAKELVRQPHNRVLICTLTNSSADLYVKGHFHESVNSGDLEIKPLRIKAEESSV
QSTDVITLQYCHRSKNGQFFSLPDKDTVDSCRVVITTTAMAMHLHDLKLPGGYFTHILID
EASQMLECEALMALGLAGPVTRVVLAGDHMQMGPKLFSVDDDQRSNHTLLNRLFHYYQAQ
ESSAALKSRIIFNENYRSTKEIVEFVSTNFYVGKSDAIKAVGNVPAHPNCHPLRFHHVRG
ESHLDNTSMSWFNREEVASVVEVVQNLLRDWPPAWGNQDQSSICVLSEGCQVSLIRKELR
KKRHGQVTVENIANVQGKQFRAIVLTAVQTRDSLLSSDSHCREFFNDARVLNTVMTRAQS
QVVVVGDAAALCYFGKSSRIWKAYIDHCISKNSADPQTLTEDYLKQELREISRFVKGDEE
DNSDSESSISEIPDIDDPILRELLDEGKDVRVTVTADGLLGITQGEAIVNPLNGLEMNTS
QDSSPLYLQALIKRDPSIYKHCHLSLERFDSGYAIPLEEPSLRISIKGRKNIGRSFPGDQ
VVVEILDNECHPPNGKVLDVVEVENASMVFVCTIDNYDDQVMTPINKCISKIYTPVWRDK
PNYFAVRKLEDLRFEKFVKINEESKRNNLFVVKVLKWREKFRYPLGVVVKVLPKVASLDS
GLEVLDIEYQLTRATSVENDHEILKELNTDTQKRRCYQEFITFTIDPAHSKDLDDAISVR
DLGQHYEIGVHIADVASRVTKGSQLDKDAQQNGSAFYPPGKDPVYMFPLCLSTEHFSLLP
GCERNAISLMVQIDKKTDRIKTSKFSLSKIKSDRKLSYEEAENIIQNSDDNGQRYDTLEG
CLTKACHFSEVHRKDRKQEDWHYKSPDDDVIVGRRRSHKMVEELMVMFNHAVTELLLKDA
KTVSCTPVRCQDKPNTEKLCQLKDKYSSLIPLSIHFCHCIDQIGNVDDNQRDAVSKPYPG
VSNQMLATRTENKNHHGQIVQPSETFSLLTSIVRSLESAFQDKDIPRIVDLIATDDIHPQ
LLPLIIELKKTIHRAYVLRSNSTYLSRVGHYDLQLESYTWASSPIRRYVDVIVQRLLHSV
LENKAVRYTSLEIDQSCLSFSRKSEKQKMYERKARWLSFASQLNNQSAQKIAFVIDASPA
GNSLRVYFPFNRSSMPENILIMYRDLQLTDQPEFNEHDNHVVLKWKRRVYSFTNENIHAE
LQQQSPHPFVTSVPTDLWKGMLSALKEENLDIVFQSLQTISSSVKDNQHVCSGLLQCTPT
ARTNPNPGHYIELPLRVKTGETLEVQLGTDTQRGLLVPVVQMLVVRNKFEICLEHSKDPT
LCFSKYAFHSSKKTYTTYQEYQKIWKPLCEMESASNAVTENDSIVLEDVPLTWKQIQKES
QLGGFFQLSLEKMKQWAIEYGLKHSFLCIRMRYQNRVDLPNNGADDDQHVDLSNIPSLIW
VAHGITTGVTDEDEAKNLSYVQIDFRINHMSMAKIPDRVFGKDTRFTVELIPKLLPDVRK
EAAVDNLTQANELVKNIALGKRTNSAPVTKELRPARFEIKLHSSKFPDLNISQTKAIKEA
LDNRFTLIQGPPGTGKTVVGVHLVYWFFLQNQKDPNHLRPKAAGGSSKRRCILYCGPSNK
SVDVVAGQLLKLPKVLKPLRVYSEQMEMLEFPYPGSNLKLSRRSIREERPKRELSSITLH
HLMRMAENPFSNEIRHFDARIKRGEDLTDMEIESYKVLLSQARNHELMRHDVILCTCTAA
SNPNFYKLDLKQIIIDECAMATEPEAFIPLVTHKPEQIVLLGDHKQLQPITHSDLSARLG
MRKSLFESYMEKALMLDTQYRMQERICEFPSKEFYNGILKTGATRKDSVLLAQSHHLTPI
LFGHVYGKEISLVVSTERGNENSKANSAEAEESVRIASLLIKRAGVAASDIAILTPYNAQ
VAKVNETLEINHIQNVNVNTITKSQGSEWRYVILSTVRSCPKSEIETEPTKAWLNKKLGF
VRDPNQVNVGITRAQEGLCIIGNQELLRCSSLWKRLLVHYQQCGCVVDPAKDIQVQNPHV
KTKSKDKRASKFRNRK
NT seq
8151 nt
NT seq
+upstream
nt +downstream
nt
atgactacgaaagagagaattcagcgccagttccctggcacgttcatggaactctgcgaa
acttgcttgcatcacagaccacgtcagttctcccgtaagggcatcaacttgaagtgcaat
tccagacacaggcatgtttggaaggcaactctagttctttatgacaagaaaaatacacgg
ttgtatgaggaagtcaggccgctgcccatcctgccccacttgaacatcagctcatggctg
tactgtaagtatgttgtgaatggtgagccatgcttgcatggcgcccatcgatgctggttt
gcacacagtaaggtagagatgaccgtgtggaacgctgagagccaggaggggtttgttcgg
gctgagctgcttcaggctgtacagaaatatcagccggtggtggcagcagcttctcggtct
ctgccccagcacttttgcaaagcctgcgatctatggtttccatcatggggagatttccag
aaccacctcaacacgttcaatcacatcaaaaggaccaacgagtataacaatgagacaaca
actgagtggaagtatcgagacccacctcaaaccaaccaagcctacaaattgtgtgaaagg
agggcctctacatgtgagcttgggagcaactgtgttgatgctcactcagcggaagaacta
caggagtggcgcacaagagacaagactgatcggaaggcagttattgctgctgaagagcag
ggtttactttcataccagggcaatctactgagagagtacaaggatataattaaaaaggct
gatattatgtctgaggcagtgtctggtgtcattatcagctgtgacaaggacatgatgatt
tcaggtcaaagagaaaatgtgccgctgacatggaagttcagaatacagtcggagaaacta
cttgcacatgtatcactactgaaacaggaacctggagcctctttctccctggttgaaaac
agtcctgagccctgcacttactccacgggtgaatcgttctgtaactcagacatgacctat
gacatcaccgtgtccttcaagtccaacaacccgggtctttacgaacagtggttagtgttc
gactttgacacaaggccagtgctcttgcagaaactcaaagttaatgttggaaaagagcct
tccattcagctagtggtgccaccagaggacgacatccatctatctttaaatcaagaacgc
tggcatcaggggaacagggacatcatcccatatatggagaagacaaaggcacaggaaaag
ctgcttacggaatatgagcctcagatttgtacgccatataaaccacttgatgaccgcaac
atgcccataaatcaccagaactacaaagagagaatgcacagcttcctgtacacagaggag
caggcagaagatcaggtggtttcaagactcaacgttcaaacaaccatcactttgtcggtc
accctagaggccactgtagacgaccctcagttcgggatgaagatagctcctctgggggaa
ctattctgtgctgtctcagttccttataatctcaccccagacacccctgagggtttgatg
ctgagacgaagcatccaatcagctctcatagcaccagtatcttcagataatcaaagtcac
aaggtctacgaagccatcatcctcaaagacaccacaagtgagtataaaatacacttgcag
ctgtctaaaagatgctgctctgacctgaaactccaaaacaatgaaacatgtgaaatggaa
gttcagttccagctgaatcgtctgaggttttgtgagatgcacaaagccatagatctcctt
ccagacacagagagagtgttaccagacttcaggaactgcattgtccctgtgagcaaaaca
cagcaaaattacaacctcaatgcaaagcagcaagcagctatggaatttatcattggagac
actgatggagcaggaagtgtgtcaccactcctcatttatggaccgtttggaactgggaaa
acccttactctagctatggcagctaaagagctggtacggcagcctcacaatagagtactg
atctgcacccttacaaacagttctgcagatttgtatgtgaaaggtcatttccatgagtct
gtcaactctggagatcttgaaatcaaacctcttagaataaaggcagaggaatcatcggta
caatctactgatgtgatcaccttacagtactgtcatcgttccaaaaacggacaattcttc
tccctacctgacaaagatacagtcgactcctgtagggtggtcataacaaccactgcaatg
gcaatgcacttacatgacctgaagctccctggcggctacttcacccacatcctgattgac
gaagcgtcccagatgcttgaatgtgaagctctgatggcccttggtctggctgggccagta
actcgagtggttctagctggagatcacatgcagatgggaccaaagctcttttcagtggac
gatgaccaacgctccaatcacaccttgctgaaccgtctgttccactactatcaagcccaa
gagagtagtgcagctttgaaaagcagaatcattttcaacgagaactatcgctccaccaaa
gagatagtagaattcgtgtccactaacttctatgttggcaagtctgatgccatcaaggct
gtaggtaatgtcccagctcatccgaactgccaccccctgaggttccaccatgtcagagga
gaatctcacttggacaacacatccatgtcgtggtttaatcgtgaagaggttgcatccgtg
gttgaagtagtgcaaaatttgctcagagattggccacctgcatggggaaatcaggatcaa
agctcaatttgtgtcctgtctgaaggatgccaggtttcactgatcaggaaagagcttcgg
aaaaaaagacatggccaagtgactgtggaaaatatagccaatgttcaaggcaaacagttc
agggcaatagtattgacagccgttcaaacccgtgacagccttctttcctctgactcacat
tgtcgagagtttttcaacgatgctcgcgtattgaacacggtcatgactagggctcaatcc
caggttgttgtggttggagatgctgctgctctctgctactttgggaaaagctcaaggata
tggaaagcctacatagaccactgcatcagcaaaaacagtgcagatccacaaacccttact
gaagattacttgaaacaagaattaagagagatttcaagatttgtcaaaggggacgaggag
gacaacagtgatagtgagtcatccatatctgagatacccgacatagatgacccaatactg
agggagcttcttgacgagggtaaagatgtacgagtcactgtaacagctgacggcctgttg
ggtatcacccagggggaggcaattgtcaacccattaaatggacttgagatgaacacaagc
caagacagctcccctttgtaccttcaggcattgataaagagagacccgagtatctacaaa
cactgtcacttgagtttggagaggtttgactcaggctacgccatacctcttgaagagccc
tccctccgcatttctatcaaaggcagaaagaatattggtcgttcttttcctggagatcag
gttgttgtggagatcttggacaatgagtgtcatcccccaaatgggaaagtgctagatgtg
gtggaggttgaaaatgcatccatggtgtttgtctgtaccattgataactatgacgaccag
gtgatgacacccatcaacaaatgcatctccaaaatttacaccccagtttggagggacaag
ccaaactactttgccgtgcgaaaactggaggatctgagatttgaaaaatttgtgaagata
aatgaggaatccaaaagaaacaatctctttgttgtcaaagtcttgaagtggcgagagaaa
tttcgataccctttaggagttgtcgtaaaagtccttcccaaagtggcctctttagatagt
ggactagaagtattggacatagagtaccaactgacaagggccacttctgttgagaatgac
catgaaattctcaaggaactgaacacagatacgcaaaaacgaaggtgttatcaagaattc
ataacatttacaattgacccagcacattccaaggatcttgatgatgccatcagtgtaaga
gatttaggtcaacactacgagattggagttcacattgctgatgttgcaagccgtgtgacc
aagggcagccaattggacaaagatgcacaacagaatggaagtgctttttatccccctgga
aaggatcctgtttatatgttcccactttgtctgagcaccgagcatttcagtctactccct
ggatgtgaacgaaatgccatatcactgatggtgcaaattgacaagaaaacagaccgcatc
aagacaagtaagtttagcctatctaaaataaagtctgatagaaagttgtcatatgaggaa
gctgaaaacatcatccaaaactctgatgataatggccaacgatatgacactttagagggc
tgcctcaccaaagcatgtcacttttctgaggttcacagaaaggacaggaaacaggaagac
tggcactataaatcccctgatgatgatgtaatcgttggtagaagacggtctcataagatg
gtggaagagctcatggttatgtttaaccacgctgtcactgaactgttgctcaaagatgca
aagacagtcagctgcaccccagtcagatgccaagacaagccaaacacagagaagctttgt
caactaaaagataaatacagttctctgattcccctgtccattcatttctgtcactgcatt
gatcagattggtaacgttgatgataaccagagggatgcggtttctaaaccttacccaggt
gtgtccaatcagatgcttgcaacgagaacagagaataaaaaccatcatggtcaaattgtc
cagccatctgagacattctctctattaacatccattgtgaggagtcttgagtcagcattt
caagacaaggatatccctagaattgtggacctgatagcaactgatgacattcatccccag
ctactgcctttgatcattgaactcaaaaagacgatccatagagcatatgttctacgctct
aactcaacatacctatctagagttggccactatgaccttcagcttgaaagctacacttgg
gcttcctcgcccattcgtcggtacgtggacgttattgttcagaggctcctgcactcagtt
cttgaaaataaagcagtcaggtacacttctctggaaattgaccagtcctgtctgagtttt
tcgagaaaatctgaaaagcaaaaaatgtatgagaggaaagcacgttggttgagttttgca
tcgcagctgaacaatcaaagtgcacagaagatagcctttgtcattgatgcctccccagct
ggaaacagtttaagagtgtattttccatttaatcgatcctcaatgccagaaaatatcctt
atcatgtatagggatctgcagttgacagaccaaccagagttcaatgaacatgacaaccat
gtggttctgaaatggaagagaagagtatactccttcacaaatgagaacatccatgctgaa
ctgcaacaacagtcacctcatccatttgtgacatcagtgccaacagacttgtggaaaggg
atgctgtcagctctgaaggaggagaacttggacatcgtgttccaatccctacagaccatc
agctcaagtgtcaaggataaccaacatgtctgctcaggtctgctccaatgtacaccaact
gccagaaccaatccaaatccaggtcattacattgaattgccattgagggtaaagactggt
gaaacactggaggtgcaactgggcactgacacacaacggggattattagtacctgtggtt
cagatgctggttgtacgtaacaagtttgagatttgcttggagcactcaaaagacccaact
ctgtgtttctccaagtatgcattccattcatcgaagaaaacatacaccacttaccaggag
tatcagaagatatggaaaccattgtgtgagatggagtcagcctccaacgctgtaacagaa
aatgacagcattgtccttgaagatgtgcctttgacatggaaacagatacagaaggagagt
caactcggtggattcttccagttgtcacttgagaagatgaaacagtgggccattgagtat
ggtctcaaacacagctttctgtgtatccgcatgaggtaccaaaatcgagtggatttgcca
aacaatggcgctgatgatgatcagcatgtggacctcagcaatatcccatctctcatttgg
gttgctcatggaataaccactggtgtcactgatgaggatgaggctaaaaacctctcctat
gtccagatagacttccggattaatcacatgtccatggccaagattccagacagggtcttc
gggaaagatacaagattcacagtagaattaattccaaagctgttacctgatgtgcgtaaa
gaggctgccgtcgacaacctcactcaggctaatgaacttgtgaagaacattgctcttggc
aagaggacaaactctgcacctgtaactaaagagctgagacctgccaggtttgagatcaaa
cttcattcctccaagtttcctgatctgaatattagtcaaaccaaagctattaaagaggcc
ctcgacaaccgattcactctcattcaggggccaccaggcactgggaagacggtggttgga
gtccaccttgtttattggttctttctgcaaaaccaaaaagacccaaaccacctaaggcct
aaagctgctggggggtcttcaaagaggaggtgcattctatattgcggaccctctaataaa
tcggtggacgttgtagctggtcaacttctgaaactcccgaaggtgttgaagccacttcgt
gtttacagtgagcagatggagatgttggagtttccctaccctggcagcaacctgaagctg
tcacgcaggtcaatcagggaggagagacccaagagagagctcagttccatcacattgcat
catcttatgcggatggctgagaacccattctccaatgaaattagacattttgatgcaaga
attaaaaggggagaagatctcacagacatggagattgagagctacaaagtcctcctaagt
caagctcggaatcatgagttgatgaggcatgatgtcattctctgcacttgtactgcggcg
tcaaatcccaacttctacaaactggacttgaaacagattatcattgatgagtgtgccatg
gcaactgagcctgaagccttcatcccccttgtgacacataaacctgaacagattgtttta
ctcggcgatcacaagcaattgcagcctatcacacacagtgatctttcagcaaggttgggc
atgaggaaatctctgtttgagagttacatggaaaaggcgttgatgcttgatacgcagtac
agaatgcaagagcgcatttgtgagtttccttcaaaggagttctacaacggtattctcaag
actggagcaactcggaaagacagtgtcctgctcgctcagtctcatcatctgacgcccatc
ctttttggacacgtttacggaaaagagatcagtcttgtggtctccaccgaacgggggaat
gaaaactcaaaggccaactcggcagaggctgaggaatcggttcgcatcgcctctctgttg
atcaagcgtgctggggtggcggctagcgacatagctattctgacaccatacaatgcccaa
gtagccaaggtgaacgaaaccctggaaattaaccatatccagaacgtcaacgtgaatacc
atcacaaagagtcaaggaagtgaatggcgttatgtcatcttgtctactgtgcgctcttgt
cccaagtcggaaattgaaacagagccaaccaaagcatggctcaacaagaagctgggtttt
gtcagggacccaaaccaagtcaatgtgggcatcactcgggctcaggagggactgtgcatt
attggaaaccaagagttgctgaggtgcagctcactgtggaagaggctgctggttcattac
cagcaatgtggctgtgtggtggatcctgctaaggacattcaagttcaaaacccacacgtc
aaaaccaaatcaaaggacaaaagagcctcaaagtttcgaaacagaaaatga
DBGET
integrated database retrieval system
