Oncorhynchus kisutch (coho salmon): 109899616
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Entry
109899616 CDS
T09179
Name
(RefSeq) TATA-binding protein-associated factor 172 isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
oki
Oncorhynchus kisutch (coho salmon)
Brite
KEGG Orthology (KO) [BR:
oki00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oki03021
]
109899616
Transcription machinery [BR:
oki03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
109899616
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
Vac14_Fab1_bd
HEAT_2
HEAT_EZ
Motif
Other DBs
NCBI-GeneID:
109899616
NCBI-ProteinID:
XP_020350603
Ensembl:
ENSOKIG00005007700
LinkDB
All DBs
Position
LG11:46210062..46271229
Genome browser
AA seq
1858 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKTAAQQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWSPSPKPKEESSADFSPEDSYSDRLSFYRFDISRLLKHGASLLGS
AGAEFEVQDDKSGEVDPKERITRQRKLLQRKLGLDIGAAIGMDTMELFNDEDLDTQYITP
SGPKGQGGTGSGPCSSSHNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRSKDM
DPNERSNDSFDGEPEEKRRKTTNVVIDQPAMEHKVLIDNVPDNSSLLEETQEWPLESFCE
ELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVECTAEQMALQHQEWLEDVVIRLLC
VFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMNDSGVAMTVDILLKLLTEDQWEVRHG
GLLGIKYALAVRKDLISAMLPRVLPAITEGLQDLDDDVRAVAAAALIPVVDGFVQLLPNK
VPFIVNTLWDALLELDDLTASTNSIMTLLSSLLTYPQVRQCSMQQSLTVLVPRVWPFLRH
TISSVRRAALETLFTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQKVWT
ELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKARCKEKAGGKPRQGALV
QVKETVQEYIAGAETVTEDPITRDYVVTRARLMAAKLLGALCRCMCDPQVNSSSQDIRPA
ESLGQLLLFHLNSKSALQRIAVALVLCEWAAVQKECQVVSSLVQPRLLAILSEQLYYDEI
AIPFTRMQNECKQLISLLADAQIDVRDRLNCSVFTIDQASELVTTIFTESTVGLNMKSKQ
FQPLDGKRQQAQSTVGETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAAKR
EENTLVQGYAASFIAKLLQQCAGRQPCPNSKIVKNLCSSVCVDPLLTPSSACPVSTTQET
AKAGMSEKECMHHVVNKTKGIITLYRHQRAAFAITSKRGPTPKTAKTPTTELPPGCTITT
DTDENKKTCLVQRRGAEFSLMTIARHFGQELTGSLPYLWESMVGPLRAVVEDNEGIDWKL
QMEKGDAAAQDLVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAARCV
GVLSKIATMETMHLFLERVLPWLGCIEDSTKQEGAIEAMACVMEQLDVDIVPYIVLLVVP
VLGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFLEQLLDS
RKLENYKIPVPIQAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHY
LRAQEYAKTKAADSTPLPSLVVCPPTLTGHWVDEVGKFCTKEYLNPLHYTGPPTERARLQ
HQVKKHNLVVASYDVVRNDIDFFRNVKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVI
LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAME
ALHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVGVEDTIST
ASTQEEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRDIQ
HSPKLSALKQLLLDCGLGSSGSAEGTEAVVAQHRVLIFCQLKSMLDIVEHDLLKLQLPTV
TYLRLDGSVQASLRHAIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR
DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANAVISQENASLQSMGTD
QLLNLFTLDKDGKDDKGELSSSGGKASIKNVLDGLGDLWDQLQYDTEYNLDSFMHTLH
NT seq
5577 nt
NT seq
+upstream
nt +downstream
nt
atggccgtttcaaggcttgatcgtctttttatcctgcttgacactggaactactccggtg
acgaggaagactgctgcccaacagctgggagatgtggtcaaactccacccacatgagctc
aacaacctgttgtcgaaggtattgacatacctgagaagtccaaactgggacacgcgtatc
gctgcgggtcaagcagtggaggccattgtaaagaatatcccagagtggagcccatcaccc
aagcccaaagaagagtcatctgcagacttttccccggaggactcctactctgaccgtttg
agtttctaccgtttcgacatctcccgcctcctcaaacatggtgcttctctactgggttct
gccggcgctgagtttgaggtccaggatgacaagtctggtgaagtggatcctaaagagcgt
atcacccgccagaggaagctgctgcagaggaagctgggactggacataggtgccgcaatc
ggcatggacacgatggagctgttcaatgatgaggacctggacacccagtacatcacgccc
agtggccctaagggacagggagggacgggctctggaccctgctccagctcccacaaccac
gtgcccatgcaggcggcagagataatagactctgagtttcgacctggcatgagcaaccga
cagaagaacaaggctaagaggatggccaagctagtggccaagcagcgatccaaagacatg
gatcccaacgagagaagtaatgacagttttgatggggagcctgaggagaagcgcaggaaa
actaccaacgtagtcatcgatcaaccggcaatggagcataaagtcttaatcgataatgtt
ccagacaactccagcctcttagaagagacccaggagtggcccctagagagcttctgtgag
gagctctgtaacgacctcttcaacccctcatgggagattcgtcacggtgcaggcacaggc
ctcagggagatcctcaagtctcaaggtgctggaggagggaagctggtggaatgcactgca
gaacagatggcgctgcagcaccaggagtggctggaggatgtggttatcaggctgctctgt
gtctttgctctggaccgttttggagactttgtctctgatgaggtggtggctccggtcaga
gagacttgtgcccagacactgggtgtggccttgcgccacatgaatgacagcggtgttgcc
atgactgtagacatcttgctgaagctgctgacggaggaccagtgggaggtccggcacgga
ggtcttctgggcatcaagtatgccctggctgtccgaaaggacctgatctccgctatgctt
ccgcgggtgctccctgccatcacagaggggctgcaggacctggatgatgacgtcagagcg
gtggcagccgcggccctcatccctgtggtggacggctttgtacagctactccccaacaag
gtcccgttcatagtgaacaccctgtgggatgctctcctggagctggatgacctgactgcc
tccaccaacagcatcatgaccctactgtcctcgctgctcacctacccccaggtccgacag
tgcagcatgcagcagtccctaacggtccttgtccctcgggtctggccattccttagacac
accatatcatcagtcagacgggccgcattagagaccctctttaccttactgtccaaagcc
gaccagagctgcgcgctatggctcaaccaggtcctgcaagacatgctccgacacatcttc
cagtcttgtatcctggagagcaatcaggagatcctggacctcatccaaaaggtgtggaca
gagctgctgcgccaggcccctcagcagtacgtggtggcagccagctgtccctggatgggc
gcctggctctgcctgatgatgcaagcctctcacatccccatagacatcaacatgttgctg
gaagtcaaggctcgctgcaaggagaaggctggcggtaagcctcgccagggagccttggtt
caggtgaaggagactgttcaggagtatatcgctggggcggaaactgtgaccgaggaccca
attacgagagactatgtggtgacacgggctcgcctcatggccgcaaaactgttgggggcc
ttgtgtcggtgtatgtgcgacccgcaggtcaactcctcctcacaggacatccgaccggct
gagtcgctgggccagctgctcctcttccacctcaactccaagtctgccctgcagcgcatc
gctgtggccctggtcctctgtgagtgggctgctgtgcagaaggagtgtcaggtggtgtca
tccttggtccagcctcgcctcttagccatcctgtcagagcagctgtactacgacgagatc
gccattcccttcacacgcatgcagaacgagtgcaagcagctcatctccctgctggccgac
gctcagatcgacgtgcgcgaccgcctcaactgcagtgttttcaccatcgaccaggccagc
gaactggtgaccaccatcttcaccgagtccaccgtgggtctgaacatgaagtccaaacag
tttcagccactggatggcaagcgtcagcaggcccagtccacggtgggtgagaccagtgtg
gagtggcagcagctgcacctgcgagtccacatgttcaccgcctgcgctgtggtcaacttg
caggcgctgccagacaagctgaacccggtggtgcgtcctctgatggaggcggctaagcgg
gaggagaataccctggtgcagggctacgccgcctccttcattgcgaagctgctgcagcag
tgtgctggtaggcagccatgtcccaattccaagatcgtcaagaacctgtgttcatcggtc
tgcgtggaccccctgctcacgccctcctcggcctgtccggtgtccacgactcaggagact
gctaaagctggcatgtcggagaaagaatgcatgcaccacgtggtcaataagaccaagggc
atcatcaccctgtaccgccaccagagggcagcatttgccatcaccagcaaaaggggcccc
acccccaaaaccgccaagacacccaccactgaactgccccccggctgcaccatcaccaca
gacactgacgagaataaaaaaacctgtctcgtccagagaagaggcgcagagttctctctg
atgacgattgccaggcactttggccaggagctgacagggtcactgccctacctgtgggag
tccatggtgggacctctgagggctgtggtggaggacaacgaaggcatcgattggaagctc
cagatggagaagggggatgctgcggcccaggatctggtcaactcactgcaggtcctggag
gtcactgctggggccatggcccccgagctcaaacctctgttgttggagcacctgccccac
ctgttcacctgtctgcagcatccgtacacggccgttcgtcacatggcggcgcgctgcgtg
ggcgtgctcagtaagatcgctaccatggagaccatgcacctgttcctggagcgtgtgctt
ccgtggctggggtgcatcgaggacagcactaagcaggagggggccatcgaagccatggcc
tgtgtgatggagcagttggatgtggacattgtgccatacattgtgctgctggtggtgccg
gtgctgggccgcatgagtgaccccagtgacagcgtccgtttcatggccacgcagtgcttt
gccaccctcatccgcttgctacccctggaggctggtatcccggaccctcccaccatgtcg
gatgatctgattcgccagaaggccagagagcgtcactttctggagcagctgcttgacagc
aggaagctggagaactacaagatccctgtgcccatccaggctgagctccgcaagtatcag
caggacggagtgaactggctgtccttcctgaacaagtacaagctccacggtattctctgt
gatgacatgggactgggcaagaccctgcagtccatctgcatcctggctggggaccactac
ctcagggcacaggagtatgccaaaaccaaggcggcagacagcacccccctaccttctctg
gtggtgtgcccccccaccctgacaggtcactgggtggatgaggtgggcaagttctgcacc
aaagagtacctgaacccactgcactacacgggaccccctacagagcgagcacgtttacag
catcaagtgaaaaagcacaacctggtagtagcctcttacgatgttgtacggaacgacatt
gacttttttaggaatgtaaaattcaattattgtatccttgacgagggccatgtgatcaag
aacgggaagaccaagctctcaaaagccataaagcagttggccgccaacttccgagttatc
ctatcaggaacgcccatccagaataatgttctggagctgtggtcgctctttgacttcctc
atgcccggcttcctgggcacagaacgccagtttgctgcccgctacggcaagcccatcctg
gccagccgtgatgccaagagctcatcgcgtgagcaggaggccggagtgctggccatggag
gcgctgcatcgccaagttctgcccttcctcttgaggaggatgaagaaggacgtgctgcag
gacctgccccccaagatcatccaggactactactgcaacctcagccctctacaggttcag
ctgtatgaggactttgccaagtcccgggccaaggtcggtgtggaggacaccatctctaca
gcctccacccaggaggaggagaagcccaagctgaaggccacgggccacgtgttccaggct
ctgcagtacttgaggaagctgtgtaaccacccaggcctggtactactgccacagcaccct
gagtacaagcgcatcacagaccagctggcagcacaacactccagccttcgagacatccag
cattcgcctaaactctcagccctcaaacagttgttgttggactgtggtctgggcagcagt
ggctcagcggagggcacagaggcggttgttgcccaacacagagtgttgatcttctgtcag
ctgaaaagcatgctggacatcgtggagcacgacctgctcaagctccagctgcccaccgtc
acctacctgcgacttgacggcagcgtgcaggcgagcctgcgccacgccatcgtctccagg
ttcaacaatgacccctccattgacgtgctgctgctcaccacgcacgtgggtggtctgggt
ctgaacctgactggtgctgacacggtggtgtttgtggaacacgactggaaccccatgaga
gacctacaggccatggaccgcgcccacaggataggacagaaacgagtggtgaatgtgtat
cgtctgatcactcggggcactctggaagagaagatcatgggcctgcagaagttcaagatg
aacatcgccaatgcggtcatcagccaggagaacgccagcctgcagagtatgggcaccgac
cagctcctcaacctcttcaccctggacaaggatgggaaggatgataagggcgagttgtcg
tcctccggagggaaagcctccattaagaacgtgctggacggtctgggggacctgtgggat
cagctgcagtatgacacagagtacaacctggatagcttcatgcacacgctccactag
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