Oryzias latipes (Japanese medaka): 101157355
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Entry
101157355 CDS
T02443
Symbol
usp47
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47 isoform X3
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
ola
Oryzias latipes (Japanese medaka)
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ola01002
]
101157355 (usp47)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ola04121
]
101157355 (usp47)
Enzymes [BR:
ola01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
101157355 (usp47)
Peptidases and inhibitors [BR:
ola01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
101157355 (usp47)
Ubiquitin system [BR:
ola04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
101157355 (usp47)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
101157355
NCBI-ProteinID:
XP_020569696
LinkDB
All DBs
Position
3:complement(20331510..20353227)
Genome browser
AA seq
1365 aa
AA seq
DB search
MEMVPSEETQFVPKEIHNAAEEPRVLCIIQDTTSAKTVNERLTLNLPASTTLSKLYEDVA
HKAGYIKGTFDLAWGNVLDMAPLEHNSEMSLSESGFDSGGKRNFLQLTDRDGEQPQIASD
ESGAADSSGLEDSSQERFIGPLPRDGSACGSGDYSSPSYSYSSILSKSDTGYVGLVNQAM
TCYLNSLLQTLYMTPEFRNALYNWEFEDSEEDPVTSIPYQLQRLFVLLQTSKKRAIETTD
VTRSFGWDSSEAWQQHDVQELCRVMFDALEQKWKQTEQADLINQLYQGKLKDYVRCLECG
YESWRIDTYLDIPLVIRPFGASQAYGSVEEALQAFIQPETLDGPNQYFCERCKKKCDARK
GLRFLHFPYLLTLQLKRFDFDYTTMHRIKLNDRMTFPEELDMSPFIDVEDEKSPQTESCT
DSGAENEGSCHSDQMSNDFSTDDCVDEGICLDSTSSTERAFKPKSLLTFELFSVMVHSGS
AAGGHYYACIKSFSDGQWYSFNDQHVSKITQDDIRKTYGGSSGSRGYYSSAFASSTNAYM
LIYRLKDPSRNSKFLAVEDFPNHIKSLVQKEKESEEQEKRQREIERNTCKIKLFCVHPVK
MMIESKLEVHKDKTLREATEMAYKLMELEGVVPLDCCRLVKYDEFHEYLERSYEGEEDTT
MGILLGGVKSSYMFDLLLETRRPEQVFQPYKPGEVMVKVHVVDLKSETIAPPISVRAYLN
QSITEFKQLIDQATGLPAETMRVVLERCYNDLRLLYVPNKTLKAEGFFRSNKVFVESSEL
TDHQVPFTDSLLWKLLDRHGNTIRLLVLLPEQSPGTLAIRPLCQKGGEDSDGAFEGSQGN
RKSVEAILEESTEKLKNLSLQQQQQGSSTSDSQKSSDTSDFEHIESPTQDADSNSSLCVA
ADNRELENRIRATPGGSGGASSDNENQFACEERSDSEVNNDRSTSSVDSDILSSSHSSDT
LCNADSGPIQLANGLDSHSITSSRRSKAHEGKKETWDTAEEDSGTDSEYDDNGKSKTEFK
YLYFRAEPYSQDDASWETQKCLVVYVDKRITLAAFKQNLEPYVGVPSTQFKVFRVYANNQ
EFESVRLNETLSSFSDDNKITIRLGRALKKGEYRVKVYQLLVNEPEPCKFLLDTVFAKGM
TVRQSKEELLPQLKEQCRLDLSIDRVRLRKKTWKNPGTVFLDYHVYEEDISISSNWEVFL
EVLNEPEKMKSMSQLAVLTRRWSPSTMKLGPFQEVILESSSVEELKEKLSEISGIPLENL
EFAKGRGTFPCDISVLEIHQDLDWNPKVSTLNVWPLYICDDGAVVFYRDSTEETLELSED
ERNELMKKESSRLLKTGYRVSYSPRKEKALKIYLDGGPVKDPGQD
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggtgcctagcgaggagacccagttcgtacccaaagagatccacaatgcagct
gaggagcccagggtgctgtgcatcattcaggacaccaccagtgcaaagacggtcaatgag
aggctgaccctcaacttgccagcttccaccactctctccaaactctacgaggacgtcgct
cacaaagctggatacataaaaggcacttttgacctcgcctggggaaacgttctggacatg
gctccactggaacataacagtgagatgtcgctttcagagtctggatttgattcgggcggg
aagaggaatttcctccagctcacggatagagacggagaacagcctcaaattgcatcggat
gagtctggagcggcagatagcagtggcctggaggacagttcccaggagcgatttattggt
cccctaccaagagatggcagtgcatgtggcagtggtgactacagcagtccatcgtattca
tactcatctatcctcagcaaatcagatacaggttatgttggcttggttaaccaagcaatg
acttgttatttaaatagccttctgcaaacactctacatgacccccgagtttagaaatgca
ctctacaactgggaatttgaggattctgaggaggatcctgtcaccagtattccctaccag
ctgcaaaggctattcgttttgctccagacaagtaagaagcgggcaatcgagaccacagac
gtaacgcggagctttggctgggacagcagcgaggcttggcagcaacacgatgttcaggag
ctatgcagggtcatgttcgatgccttagagcagaagtggaagcagacagagcaggctgat
ctgatcaaccagctgtaccaggggaagctgaaggattatgttcggtgtttggagtgtggc
tacgaaagctggagaattgacacgtacctggacatccctcttgtgatcagaccctttgga
gctagccaggcatatggcagtgtggaggaagctttgcaagcattcatccagccagaaacc
ctggacgggccaaaccagtacttttgtgaacgctgtaaaaagaaatgcgatgcacgaaag
ggtttaaggtttctgcactttccctacctgctgactttacagctgaaaaggtttgacttt
gactacaccactatgcatcgcatcaagcttaatgatcgcatgacttttcctgaggagctt
gacatgagtccattcattgatgtggaagatgagaagtcaccacagacagagagctgcact
gatagtggagccgagaatgaaggcagttgtcacagtgaccaaatgagcaacgatttctcc
actgatgactgcgtggatgagggcatctgcttggacagcaccagcagtacagagagggct
tttaagccaaagagcttgctgacctttgagctgttctcagtcatggtccattcggggagt
gctgcaggtggccactactacgcctgcatcaaatctttcagtgacggccagtggtacagt
ttcaacgatcagcatgttagcaagattacacaagatgatatcaggaaaacttatggtgga
tcctcagggagcagaggttactattccagtgcctttgcaagctccacaaatgcatacatg
ctgatttataggttgaaagatccttcaagaaattcaaagtttctagctgtagaagacttc
ccaaatcacataaagagcttggttcagaaggagaaagagtctgaggagcaggagaaacgc
cagagggagatcgagcgcaacacatgcaagatcaaacttttctgcgtgcatcctgtgaag
atgatgatagagagcaagttggaagttcacaaggacaaaactctcagagaagcaacagaa
atggcctacaagctaatggagctggaaggtgttgtccctctggactgctgtcgcttggtg
aagtacgatgagtttcatgagtacctggagcgatcgtacgaaggtgaggaagacactacg
atgggaattctcctcggaggtgtaaagtcttcgtacatgttcgacttgctgctggagacc
cggagaccagagcaagttttccagccttacaaacctggagaagtgatggtgaaggttcat
gtggtggatctgaagagtgagaccatcgcgcctccaatcagtgtccgagcatacttgaac
cagtcaatcacagaatttaaacagcttattgatcaggctacaggactgcctgcagaaacg
atgcgagtggtcttggagcgctgttacaatgacctaagactcctttatgttccaaacaaa
accctcaaagctgagggattcttcaggagtaacaaggtttttgtggagagctccgagctg
actgatcatcaggttccatttactgactcattgttgtggaaactgttggatcgtcacgga
aacacaatccgtctgttagtcctgctgcctgagcagtctcctggtaccctggccatcaga
cctctttgccagaaaggaggagaggactctgatggggcctttgaggggtcacagggcaac
aggaaatctgttgaggccatcctcgaagagagcacagaaaagttgaagaatctctcgctg
cagcagcagcagcagggctccagcaccagcgacagccagaaaagctctgacaccagtgac
tttgaacatattgaatccccaactcaagacgctgactcaaactcctccctctgcgtcgct
gcagacaacagagaattagaaaacaggatcagggctacaccagggggcagcggcggcgcc
tcctctgataacgagaaccagtttgcctgcgaagagcgatcagactcggaggttaacaac
gaccgcagcaccagctcagtggacagtgatattctgagttccagccacagtagcgacacc
ctgtgtaacgcagacagcggccccatccagctggccaatggcctggattcacacagcatc
accagcagccgacgctccaaagcccacgagggcaaaaaagagacgtgggacaccgccgag
gaagactctggaacagacagtgaatacgacgacaacggaaagagcaagacagaatttaag
tatctgtacttcagagcagagccttactcacaggatgacgcttcgtgggaaacacaaaaa
tgtttagtggtttatgtggacaagaggataacattggcagccttcaaacagaacctggaa
ccctacgttggcgttccctctacccagttcaaggtctttcgtgtgtatgccaacaaccag
gagtttgagagtgtgcggctcaacgaaacactctcatctttctctgacgacaacaagata
accattcgacttggaagagctcttaaaaagggtgaatacagagttaaagtctaccagctg
cttgtgaatgaaccagagccctgcaagttccttttggacacggtgtttgccaaaggcatg
actgtcagacagtccaaagaagagctgctgcctcagttgaaagagcagtgcaggcttgac
ctcagcattgacagggttcgtctcaggaaaaagacatggaagaatccaggcactgtgttt
ttggattaccacgtctatgaggaggacatcagcatttcctccaactgggaggtcttcttg
gaagtccttaatgaaccagagaaaatgaagtcaatgtcacagctggctgttctgacccgg
cggtggagcccctctacgatgaagctcgggcctttccaggaggtgattctggagagcagc
agtgtcgaggaactcaaagagaagctcagtgaaatcagtggcattcctttggaaaatctg
gagtttgcaaagggcaggggaacttttccatgtgatatatctgtgttggagatccatcag
gatttagactggaatcctaaggtgtcaacacttaatgtgtggcctctttacatctgtgat
gatggagctgtggtcttttacagggatagcacagaggaaactcttgagttgtccgaggat
gagcgtaatgagctgatgaagaaggagagcagccgcctcctcaagaccggataccgtgtc
agctactctccacgtaaagagaaggccctgaagatctacctggatggcggccctgttaaa
gacccaggacaagactga
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integrated database retrieval system