KEGG   Oryzias latipes (Japanese medaka): 101158723
Entry
101158723         CDS       T02443                                 
Symbol
xrcc1
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
ola  Oryzias latipes (Japanese medaka)
Pathway
ola03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ola00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    101158723 (xrcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ola03400]
    101158723 (xrcc1)
DNA repair and recombination proteins [BR:ola03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     101158723 (xrcc1)
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 101158723
NCBI-ProteinID: XP_023820088
LinkDB
Position
16:25076870..25095169
AA seq 630 aa
MPEIKLKHVVSCTSEDNTHKADNLLSSDTYRKWKAARAGEKQTSVILQFEKEEQVHSIDI
GNEGSAFVEVLVANSSAPKTQDYEVLLVTSSFMSPTESRNGSNLNRVRFFGPNQLQKSTA
QEKWDRVKIVCSQPYNKNIAYGIAFVKFHSPPDKNEPPSSSPKVTKLGQFRIKDESPSSG
SSLQPGSLFFNRENANKSSTSPKVSPQSDKLSYAAAALQAGGGPHPSGQASSSSSSSASP
QPPVKRKFEFSKERLSASGPSPSTKKSPAGSPESKAATPKLKPSPAATPSPSTTKVSSTQ
RSTEKKKEVQSKPELKPKPKTKPQSEQQVPFKKIMEGVVFVLSGFQNPFRGELREKALEM
GAKYRPDWTSDSTHLICAFANTPKYSQVKSAGGIIVRKEWVLDCHKRKQKISFKRYLMDG
DESSSESEMEVDEDSEEEVKTKFLQTPQKKEIQVTPKKSPAKRDEEEEYARSTDEEPGAD
EDESGVDTEDELQRVENESRRKKAAAERTAEEEEDPYGGSTDENTDAEAEEDHPIPELPD
FLSGKHFFLYGKFPNDERRLLLRYIVAFNGVIEDYMTDKVQFVVTSEGWHESFEDALMEN
SNLNFVKPAWIYAINERQKLLPYQPYTVVP
NT seq 1893 nt   +upstreamnt  +downstreamnt
atgccagaaatcaaactcaaacacgtcgtatcctgcacttccgaggacaatactcacaaa
gcggacaacctgctgagctcagacacctacagaaagtggaaagcagcgagagccggggag
aagcagacatcagtcattctgcagtttgagaaagaggagcaggtgcacagtatcgatatt
ggaaatgaaggatccgcttttgttgaggtgctggtggcaaactcttcagcccctaaaact
caggactacgaggttcttctcgtcacatcttccttcatgtctccaacggaaagtcgtaac
ggatctaacctgaaccgcgtgcgtttctttggacccaaccagctgcagaagagcacagct
caggagaaatgggacagagtcaaaattgtttgcagccagccatacaacaagaacatagcg
tatggaatcgcctttgttaagttccactctccacctgacaaaaatgagcctccaagttcc
tcccctaaagtgacaaagctgggacagttcagaataaaggatgagtcgccttcatctggg
tccagtctgcaacccggaagtctcttctttaaccgagaaaatgcaaacaagtcgagcact
tcacctaaagtgtctcctcagagtgacaagctgagttacgctgctgctgctctgcaggca
ggtggaggccctcacccatcaggccaagcctcctcctcctcctccagctcagcctcacca
cagccacctgtaaaaagaaagtttgagtttagcaaagagcgactgtctgcctccggtcct
tctccctcaaccaaaaagagtcctgctggttctcctgagagcaaagccgccacgcccaaa
ctcaagccaagcccagccgctacgcccagcccaagcaccactaaagtgtcgtccactcag
agatccactgagaagaagaaggaggtacagtctaaaccggagcttaaacccaaaccaaaa
accaaaccccaaagtgagcagcaggtcccgttcaagaagatcatggagggggtcgtgttt
gtgctaagcggcttccaaaaccccttcagaggggagctgagagaaaaagccctggagatg
ggagccaagtaccgcccagactggacgtccgactccacacatctcatctgcgccttcgcc
aacacccccaaatacagccaggtgaaatcggcggggggcatcatcgtgcggaaggagtgg
gtgttggattgccacaagaggaaacagaagatctcctttaagcgttatttgatggatgga
gacgagtcgagctctgaaagcgaaatggaggtagacgaagatagcgaggaagaagtgaag
acaaagtttctacagactccgcagaaaaaggagatacaagtcaccccaaagaaaagtcca
gcaaagagggatgaagaggaggagtacgctagatccactgatgaggaaccaggagctgac
gaggacgaatcaggcgtggatacagaggatgagctgcagagggtggagaatgagagcagg
aggaagaaagcagcggcagaaaggacagcggaggaggaggaggatccttatggggggtcg
acagacgaaaacaccgacgctgaagctgaggaggatcatcccatccccgagctaccagat
ttcctcagtggaaagcactttttcctgtatggaaaattccccaacgatgagagacgactg
ctgttgcgatacatcgtcgcctttaatggggtgattgaggactacatgacggataaagtg
cagtttgtggtgaccagtgaagggtggcacgagtcctttgaagatgccctgatggaaaac
agcaatctgaactttgtgaagcctgcatggatttatgccatcaacgagcgacagaagctc
ctgccctaccagccttacaccgtcgtcccctga

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