Oryzias latipes (Japanese medaka): 101168695
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Entry
101168695 CDS
T02443
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ola
Oryzias latipes (Japanese medaka)
Pathway
ola03013
Nucleocytoplasmic transport
ola03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ola00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101168695 (upf1)
03015 mRNA surveillance pathway
101168695 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ola03019
]
101168695 (upf1)
Enzymes [BR:
ola01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101168695 (upf1)
5.6.2.5 RNA 5'-3' helicase
101168695 (upf1)
Messenger RNA biogenesis [BR:
ola03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101168695 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101168695 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
101168695
NCBI-ProteinID:
XP_023810022
LinkDB
All DBs
Position
4:13849683..13863968
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFDFTDFTLPSQTQTQGQTPSQLDSQQVN
GPDEGLLNGGLDDSVAKTSQFLGELNFEEDEEDAYYTKDLPVHACSYCGIHDPACVVYCN
TSKKWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIP
AKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQIT
AQQINKLEELWKDNPTAALEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDK
KLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGARFMSTAMYDAREALIPGSAYDRSSTAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQANGPAAGRGAMKGKPGRSGRQRVRGIGNQGPGQVNGP
NSQVSQDGASQSFSQGPLTQGYISISQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctctcagaccctcaccttcctggacaccgaggaa
gcggagctgcttggagcggacacacaaggctccgagtttgacttcactgacttcactctt
cccagccagacgcagactcaaggccagactccgagccaactggacagccagcaggtcaat
ggaccggacgagggtctgctcaacgggggattggacgattctgtggccaagaccagtcag
ttcttgggcgaactgaactttgaagaagatgaggaagatgcgtactacaccaaagacctg
cctgtgcatgcttgcagctactgtggtattcatgacccagcgtgtgtggtgtactgtaat
accagtaagaagtggttctgtaacggacgtggcaacacatctggcagccatattgtgaat
cacatggtgagggccaaatgcaaagaagtgacgctgcataaagatggaccgctgggtgaa
acggttctggagtgctacaactgtggctgccgcaacgtcttccttctgggctttatccct
gccaaagccgattctgtggtggttctcctctgcaggcagccctgtgctagccagagtagc
ctaaaggacatcaactgggacagctcccagtggcaaccactgattcaggaccgctgtttt
ctgtcctggctggtgaagatcccatcggagcaggagcagctgcgagctcgtcagatcacc
gctcagcagatcaataagctggaggaactctggaaggacaatcccaccgctgcactggaa
gacctggagaagcctggcgtggacgaggagccccagcatgtgctgctgcgttatgaggat
gcttaccagtaccaaaacatctttggtcctttggtcaagctggaggctgattatgacaag
aagctgaaggagtcacagactcaagacaacataacagtcaggtgggacctggggctgaac
aagaagcgcattgcatattttacactgcccaagacagactctgatatgcgcctaatgcaa
ggtgatgagatctgcctgcgttacaagggagacctggcgcctttgtggaagggcatcggc
catgtcatcaaagtccctgacaactatggggatgaaattgctattgaattgaggagcagc
gttggagctcctgtggaaatcccacataacttccaggtggactttgtgtggaaatccacc
tccttcgacaggatgcagagtgccctgaagacctttgctgttgacgagacatcggtctct
ggctacatttatcacaaacttttgggccacgaggtggaggacgttaccatcaagtgccaa
ctgccgaagcgtttcaccgctcagggccttcctgacctcaatcactcgcaggtctacgca
gtaaagacagtgttgcaaaggcctctgagtttaatccagggtcctcctggcactgggaaa
actgtcacttctgccacaattgtgtaccacctatcccgtcagggcaacgggccagtcctg
gtgtgtgctccaagtaacatagctgtagatcagctcactgaaaagattgataagactggt
ctgaaggttgtcaggctgtgtgctaagagcagagaagccatcgagtcaccagtgtctttc
ctggctctccacaaccagatcagcaacatggacagtatgccagagcttcagaaactgcag
cagctgaaggatgagactggagagctgtcgtctgcagatgagaaacgttacagggctctg
aagcgcacagctgagagggagctgctcatgaacgctgatgtgatttgttgcacctgtgtc
ggggctggggatccccgtttggccaagatgcagttccgctccatcttgattgatgagagc
acccaggccaccgagccggagtgtatggtgccggtggtgctgggagccaaacagctcatt
cttgtcggggaccactgccagctgggtcctgtggtgatgtgcaagaaggcagcaaaggcg
ggcctgtctcagtctctgtttgaaagactggtggttctgggaatccggccaatccgcctg
caggtccagtaccgcatgcacccggctctcagcgccttcccctccaacattttctatgag
ggctcgctgcagaacggtgtcactgcagctgatcgcatcaagaaaggcttcgacttccag
tggcctcagccagataaacccatgttcttctatgtgactcagggtcaggaggaaattgcc
agctctggaacctcctaccttaacaggactgaggctgcaaacgttgagaaaatcaccacc
aggctgctgaaggcaggagccaaacccgatcagatcggcatcatcaccccttatgagggc
cagcgctcctacctggtccagtatatgcagttcagtggctccctgcacaccaaactttat
cagcaagtggagattgccagcgtggacgccttccagggcagagagaaggatttcatcatt
ctgtcttgtgttcgtgcaaatgagcaccagggcattggtttcctgaacgaccctcgtcgt
ctcaacgttgcgctgaccagagccaagtatggggtgatcattgtggggaaccccaaagcc
ctgtctaaacagcctctgtggaacaacctgctgaacaactacaaggagcagaaggttctg
gtggaggggcccctcaacaacctcagagagagcctcatgcagttcagcaaaccccgtaaa
cttgtcaacaccatcaaccccggggctcgttttatgagcactgccatgtatgacgctcga
gaggctctcatccctggatctgcatacgatcgaagcagcactgctggacgtccgtccaac
atgtactttcaaacacacgaccagattggaatgattggggcgggcccaggtcacatggcc
gctatgaatatccccataccgttcaacctggtgatgcccccaatgcctcccccaagttac
ttgggtcaggcgaacggccctgctgcaggccgtggggctatgaaagggaagcccgggcgc
agcgggcggcagagggtccgcggcatcgggaaccagggtcccgggcaggttaacggacca
aacagccaggtcagccaggatggggcctcccagtctttctctcaggggccgttgacccag
ggctacatctccataagccagccctctcagatgagccagcccggcctctcccagcccgag
ctgtctcaggacagctatctgggtgatgagttcaagtcccaaatcgacgtggccctgtcc
caggactcgacctaccagggcgaacgtgcgtaccagcatggcggagtgaccggactgtca
cagtactaa
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integrated database retrieval system
