Olivibacter sp. LS-1: FKG96_03660
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Entry
FKG96_03660 CDS
T06195
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
oli
Olivibacter sp. LS-1
Pathway
oli03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
oli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FKG96_03660 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oli03400
]
FKG96_03660 (mfd)
Enzymes [BR:
oli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FKG96_03660 (mfd)
DNA repair and recombination proteins [BR:
oli03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FKG96_03660 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF5625
Motif
Other DBs
NCBI-ProteinID:
QEK99935
UniProt:
A0A5C0ZE25
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All DBs
Position
923654..926992
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AA seq
1112 aa
AA seq
DB search
MTIKDILQQYKEHKGVLSFTKALQGAKPRIQLKGLIGSADAITAVSSYQLQERPFIFVLP
DYEEAAFFLSDLEGLLDKQVLFFPSSYRKPFDFTQADSAHVLQRAETLSTLNHASELPKM
IVTYPEALAEKVINRTELSKNTLEISINAKLDIDFINEFLIEYDFERVDFVYEPGQFAIR
GGIVDIFSFSNDLPYRIEFFGNLVESIRTFDTENQLSVNKIHTVTIVPNVQAKFLTENNI
SLLEYIDSDAVIWIKDVQFTLDIVQSGYKNASKLWSALSAQDKEHNPEWIDPKFSFTDEK
MLANLLQDFPVVEFGKQFFYDADHQIQFNQRPQPSFNKDFGLLIHNIKENEEKKITNCIF
SDSPKQIERLFAILDDLDKTVKFIPISIALREGFSDEELKLACYTDHQIFDRYYKYKHKK
GYARSQAITLKELRDLKPGDYITHIDHGIGKYAGLEKVEVNGKMQEMIRLVYADNDLLYV
NINSLNRISKYTGKDGTVPKMNKLGTDTWDKLKRTTKKKVKDIARDLIKLYAQRKAQTGN
AFSPDTYLQTELEASFIYEDTPDQEKATNDVKKDMEAPHPMDRLVCGDVGFGKTEVAVRA
AFKAVADSKQVAVLVPTTILALQHHRTFSERLKGFPCNIDYINRFKTSKEIKDTLKRLAE
GEIDIVIGTHRLVSKDVKFKDLGLLIIDEEQKFGVGVKEKLKQLRVNVDTLTLTATPIPR
TLHFSLMGARDLSIISTPPPNRQPVQTELHVFNEKLIQEAVAYEINRGGQVFFIHNRVQD
LRQLGALITKLVPNARCGVAHGQLEGDALEDVMLKFINHEFDVLVATTIIEAGLDIPNAN
TIIINHAHMFGLSDLHQMRGRVGRSNKKAFCYLLSPPLSTLTPEARKRLSAIEEFSELGS
GFNVAMRDLDIRGSGNLLGAEQSGFIAEIGFEMYHKILDEAIQELKDDEFEGLFKEEKAR
VYVNFTQIDTDLEVYIPDSYVTNVGERYNLYNQMASLKTENEIESFEQDLADRFGPVPLP
VKELLNTLRLQWLGKEIGFEKISYKKNVLRGYFISNKKSPYFESERFGKVLQFVQQNPSV
CNLKEVKGSLRIGFDRIQSVDEAVMLLQELAR
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
gtgacaataaaagatattttacaacaatataaggaacacaaaggagtcttatcgtttaca
aaagcacttcagggagccaagcctagaattcaattaaagggattgataggatcagccgac
gccataacggcggtttcgagttatcagctgcaggaacgaccttttattttcgtattaccc
gattatgaggaagcagcgttctttttgagtgatttagagggcctcctggataagcaggtt
ctttttttcccctcctcttatcggaaaccctttgattttactcaagcggatagtgcgcat
gtattgcagcgagcagaaaccctcagtacgctgaatcacgcttcggaattgccaaagatg
atcgtgacctatccggaagcgctagcagaaaaagtaattaaccggactgaactaagtaaa
aatacacttgaaatatccattaatgcaaagttggatatcgattttatcaatgaatttttg
atagagtacgactttgagcgagtggattttgtgtacgaaccgggacaatttgcaattagg
ggagggatcgttgatattttttcattctcaaatgatttaccctatcgcattgagttcttt
ggcaaccttgtggaaagtatacgcacattcgatacagagaatcaactttctgttaataag
attcatacggtaacaattgttccaaatgtgcaggcgaagtttctaacagagaacaatatt
tctttactggaatatatcgatagtgacgccgtcatctggattaaagatgttcaatttacc
cttgacattgtgcaatctggatacaaaaatgccagcaaactttggtccgctttatcggcc
caggacaaagaacataaccccgaatggatcgatcctaaattcagcttcacggatgaaaag
atgcttgcgaacctgttacaggattttccggtagttgagttcggtaagcaatttttctac
gatgctgatcatcaaattcaatttaatcagcgacctcagccctctttcaacaaagatttt
ggactacttattcacaatataaaggaaaatgaggagaagaaaatcaccaattgtattttt
agcgactctccgaaacagatcgaaaggttgtttgccattttagatgatctggataaaacg
gtcaaatttattcccataagtattgccttacgtgaaggatttagcgatgaagagctcaaa
ctagcttgctatacggaccatcaaatttttgatcgctattataaatataaacataaaaaa
ggctatgcccggtcacaagcgattactttaaaagaacttcgtgaccttaaacccggcgat
tatattactcatattgatcacgggataggtaaatatgcgggcttggaaaaagtagaagtt
aatggcaaaatgcaggaaatgattcgcctggtttacgccgacaacgatctgctatatgtt
aatataaactccttaaatcggattagcaagtatacgggtaaagatggtactgttcctaaa
atgaataaattaggaaccgatacttgggataagctaaaaagaaccactaaaaaaaaagtt
aaagatattgcccgcgatctgattaagctatatgctcaacggaaagcgcaaacggggaat
gctttcagcccggacacttatttgcaaacggaattggaagcctcctttatttatgaggat
acaccagaccaagaaaaggcgaccaacgatgtaaaaaaagatatggaggcaccgcatccg
atggatcggctcgtatgtggtgatgtcggttttggaaaaacagaggtagctgtacgggct
gcttttaaggcagtcgctgatagtaagcaggtggcggtgttggttcctacaacaattttg
gcattacaacatcacaggaccttttccgaacggttaaagggatttccttgtaatattgac
tatatcaaccggtttaaaacgagcaaagaaataaaggacacgttgaagcgactcgccgag
ggtgaaattgatattgtgatcggaacgcatcgcctggtaagcaaagatgtgaaattcaag
gatctcggactattgattattgatgaagaacagaaatttggtgtaggtgttaaagagaag
cttaagcaattgcgtgttaatgttgatacgctgacgcttactgctacgccgattcctcgg
acacttcatttttcgttgatgggagcaagagatttaagcatcataagcactcctccgcca
aatcgtcaacctgtacaaacggaattgcatgtatttaatgaaaaactgatacaagaggct
gtggcctatgaaattaatagaggcgggcaggtcttctttatccacaatcgggtgcaggat
cttcgccaattgggagctttgatcactaagctggtgccaaatgcaagatgtggtgttgcc
catgggcaattggaaggtgatgccttagaggatgtcatgctcaaatttattaatcatgag
tttgatgtgttggtggccacaacgattattgaggcgggtttggatattccgaacgcaaat
accattattattaaccatgcgcatatgttcggcctaagcgatttacatcaaatgcgaggg
agagtgggtcgatccaacaaaaaggctttttgttatttattgtctcctcccctttcgacc
cttacacccgaggcacgtaaacgtctgagcgccattgaagaatttagtgaactgggaagt
gggttcaatgtagcgatgagggatttggacattcgtggaagcggaaatctattaggtgca
gaacaaagtggttttatcgcagaaataggctttgaaatgtaccataagattttggacgaa
gctatccaagaattgaaagacgatgaatttgaagggttgtttaaggaggaaaaggctaga
gtatatgttaattttacgcaaatagacacggatttagaggtatacattccggattcttat
gtaaccaatgtaggtgaacgttataatctatacaatcaaatggcgtcgttaaagaccgaa
aatgaaatcgagtctttcgagcaggatttggccgaccgtttcgggccggtaccattgccg
gtaaaggagttgctaaatacgcttcgtttacaatggcttggtaaagaaataggttttgag
aagatatcctacaaaaagaacgtgcttcgggggtacttcattagcaataaaaaatcaccg
tattttgaaagtgaacgatttggaaaggttttgcagtttgttcagcaaaatccatcggtt
tgtaacctaaaagaagtaaaaggaagtttgcgtatcggattcgacagaattcaaagcgtg
gatgaagctgttatgcttcttcaggaattagcccgttaa
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