KEGG   Olivibacter sp. LS-1: FKG96_10260
Entry
FKG96_10260       CDS       T06195                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
oli  Olivibacter sp. LS-1
Pathway
oli03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:oli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FKG96_10260 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oli03400]
    FKG96_10260 (ligD)
Enzymes [BR:oli01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FKG96_10260 (ligD)
DNA repair and recombination proteins [BR:oli03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FKG96_10260 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S TGT_C1 Ripply
Other DBs
NCBI-ProteinID: QEL01174
UniProt: A0A5C0ZJI0
LinkDB
Position
complement(2530092..2532809)
AA seq 905 aa
MPLDQYRNKRDFKKTSEPKSGKSPNRKQLTFVVQKHKASRLHYDFRLEMDGVLKSWAVPK
GPSTDPQNKRLAMMVEDHPMDYRQFEGIIPKGQYGGGTVIVWDEGTYEPIEGLKSKKAQE
KHLLEQLHKGSLKIRLHGHKLKGEYALVKTQGMGENGWLLIKHKDEFASKSDITKKDKSV
LSDKALEEIEKSSNKVWQNGREKTVEKSRKTTQAKKSKNADEHLADDVNEAGEPQKMDVP
SLLKKAPESTIPKSIKPMKATLIDEPFDDPDWLYEVKWDGYRAIAKVSKTDVKLISRNNI
PFDKYYPLVDLLKGWRINAIIDGEIVVLDEKGLSDFGALQNWRSEADGNLVYYVFDILWY
EGKNLMGLPLVERQAILQDILPTDDDRIRQSKVFAARGIDFFDAAEQVGLEGIIAKKADS
KYTSDLRSKEWLKIKVQRRQEVVIAGFTRNEGTSKAFSALVMGVYDGKKLRYAGKVGTGF
SDSKQKEMMKLFKPLITDRSPFDVEPDVDKPSRFRPQRLGAKPTWLKPELVCEVNYAEVT
SEGIFRQASFKGMREDKEADDVVLEKAADTESTVAEVEEEDKGTKHAIKPAKTERRTLLN
PREETQTRKVNGKELKFTHLSKVYWPDDGITKRDMFNYYYRIAEFILPYLKDRPMSLNRF
PNGIKGPSFYQKDVKGKVPEWVSKTYPYTTSEGEHKEYLVGDDEATLLWMASLGCIEMNP
WFSRVQSPDNPDYCVIDLDPDKNTFEQVIEAAQEVRKVLDALGVSSYPKTSGSTGIHIYI
PLGAKYSYEQSQLFAKVIVSLVHEQLPDFTSLKRKVSDRKGKMYLDFLQNRPGATIAGPY
SLRPKPGATVSMPLAWDEVKRGLKMSDFTIHNAYDRLKETGDLFKGVLGKGIELNKIIKK
AQNDL
NT seq 2718 nt   +upstreamnt  +downstreamnt
atgccgcttgatcaataccgtaacaaacgagattttaaaaagaccagtgaaccgaagtca
ggtaagagtccgaaccggaaacaactcacttttgtggtgcaaaaacacaaagcttcgcga
ttacattacgactttcgattagaaatggatggggtgctgaaaagctgggctgtgcctaaa
ggcccatccactgatccgcagaacaagcgtttggcgatgatggtagaagatcatcccatg
gactatcggcagtttgaggggattatccctaaaggacaatatggcggcggtacggtaatt
gtttgggacgaaggcacctatgaaccaatagaaggactgaagagtaagaaggcacaagaa
aaacatttattggagcagcttcataaagggtcactcaaaatccggctacatggacataaa
ctaaaaggcgaatatgcgctggtaaaaacacaagggatgggtgaaaacggctggctcctt
atcaaacacaaagacgaatttgccagtaaatctgatatcactaaaaaagacaagtcggtg
ctttctgacaaagcattggaagagattgaaaaaagcagcaataaggtatggcaaaacggc
cgtgagaaaaccgttgaaaagtctagaaagaccacacaagcaaaaaaaagcaaaaatgct
gatgaacacttggcagatgatgtaaatgaagccggagagccgcagaagatggatgtaccc
agcttgctaaaaaaagcaccggaatccactattccgaaatcaatcaaaccgatgaaggct
acccttattgacgaaccttttgatgatccggattggctatacgaagtaaaatgggatggt
tatcgtgccattgccaaggtcagtaagacagatgttaaactaatttctcggaataatatt
cctttcgataaatactatccgcttgtcgaccttttgaaaggatggcgtatcaatgccata
attgatggggaaattgttgtgctagatgaaaaagggctgtccgactttggggccttacag
aattggcgaagcgaagccgatggcaacttggtttattacgtttttgacattttatggtat
gagggcaaaaacctgatgggattgccattggtagaacgacaggcaatccttcaggacata
ttacctaccgatgatgatcgtatccgccaaagtaaggttttcgccgcaagggggatcgac
ttttttgacgcggcagagcaggtcgggcttgaaggtattatagcaaaaaaagctgatagt
aagtacacttctgacctccgatcgaaagagtggcttaagatcaaagtgcaacggcgacaa
gaagtagtgatcgctggatttacgcgtaatgagggaacgtccaaagcgttcagtgccctc
gtcatgggggtgtatgacggaaagaaacttcgatatgcgggtaaagtgggcaccggtttt
tcggacagcaagcagaaggaaatgatgaagctattcaaaccgctgattaccgacagaagt
cccttcgatgtagaacctgacgtggacaagccatcccgttttcgtccacaacgactcggc
gcaaaacctacatggctgaaaccggaactggtatgcgaagtgaattacgccgaagttacc
agcgaaggaattttccggcaggcatctttcaaaggtatgcgggaggacaaagaagccgat
gatgtcgtattggagaaagcggctgacacagaatccaccgtggccgaggtggaagaagaa
gacaaggggactaaacatgcaatcaagcccgctaaaaccgaaaggcgtaccctcttgaac
ccacgtgaagagacgcaaacacgcaaagttaatggtaaagaattgaaatttacgcatctc
agcaaggtctattggccggatgacggcattaccaaacgagacatgttcaactattattac
agaatagccgaatttatcttaccctacttgaaagatcgtccgatgtctctgaaccgcttc
ccaaatggcattaaaggtccaagcttttatcaaaaagatgtgaagggaaaagtgccggaa
tgggtaagcaaaacttacccatacaccaccagcgagggtgaacataaagaatacctggtt
ggcgacgatgaagcaaccttgctatggatggcgtcattaggctgtattgagatgaatcct
tggtttagcagagtgcagtcgcccgataatccggattattgcgtgatcgatctggatcct
gataaaaacaccttcgagcaggtcatcgaagccgctcaggaagtgaggaaggtattggac
gctttaggcgtatcgagctatcctaaaacatcagggtccaccggtattcatatttacatc
ccattgggagcgaaatactcttatgagcaatcgcagctttttgcaaaggtcatcgtcagt
ctggtacacgagcaactacccgatttcacatccttaaaacgaaaagtaagtgatcgaaaa
gggaagatgtatctagacttcttgcaaaaccggcccggagccactatagctggcccctac
tccctacgaccaaagccgggagcaaccgtctcgatgccacttgcctgggacgaagtgaaa
cgtggtttaaaaatgagcgactttactattcacaatgcttatgatcggttgaaagagact
ggtgatctcttcaaaggagtacttggaaagggaatagaacttaataaaatcataaaaaag
gcgcagaacgatttgtaa

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