KEGG   Ostreococcus lucimarinus: OSTLU_16988
Entry
OSTLU_16988       CDS       T01029                                 
Name
(RefSeq) predicted protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
olu  Ostreococcus lucimarinus
Pathway
olu03030  DNA replication
olu03410  Base excision repair
olu03420  Nucleotide excision repair
olu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:olu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    OSTLU_16988
   03410 Base excision repair
    OSTLU_16988
   03420 Nucleotide excision repair
    OSTLU_16988
   03430 Mismatch repair
    OSTLU_16988
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:olu03032]
    OSTLU_16988
   03400 DNA repair and recombination proteins [BR:olu03400]
    OSTLU_16988
Enzymes [BR:olu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     OSTLU_16988
    6.5.1.6  DNA ligase (ATP or NAD+)
     OSTLU_16988
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     OSTLU_16988
DNA replication proteins [BR:olu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    OSTLU_16988
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     OSTLU_16988
DNA repair and recombination proteins [BR:olu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     OSTLU_16988
   NER (nucleotide excision repair)
    Other NER factors
     OSTLU_16988
   MMR (mismatch excision repair)
    Other MMR factors
     OSTLU_16988
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DDE_Tnp_IS66_C
Other DBs
NCBI-GeneID: 5004221
NCBI-ProteinID: XP_001419907
JGI: 16988
UniProt: A4S3E9
LinkDB
Position
10:117181..119175
AA seq 664 aa
MPKAKAKAKTKAKKEEPATAGLGDKSVEAAERYLEYDPVSKVTWKLGDATPYLYLANIFE
SIAETTKRLEIAELLTNAFRTILASKPTDLLAAVYLASNTIHPQHEGIDLGIGDATLIKA
LAEATGRKDESIKNDYKEAGDLGSVAMASRSTQRMMFPPPPLTVTGVLKEFRAIATTDGE
KSVDRKKGMIKKLLVSARECEAGYVIRSLQGKLRIGLAQQTVTQSLAHAIVLHGDAGKKK
KGAELADALGAAFDVLKQVFSECPTFDQIVPALLEVGIEGLQERCKFTPGVPVKPMLAKP
TTGVSEVLKRFEDIAFTCEYKYDGERAQIHLQENGKVSIFSRNQEDNTAKFPDLINGLKR
YIKPHVKSVVIDCEAVAYDREQNKILPFQILSTRGKKNIVESEIKVKVALYAFDCLYLNG
EPLLREPMHKRREALYSAFQEVPGEFFFVTEKTSRDIDELQGFLDESIAENTEGLIVKTL
DATYEPSKRSLNWLKLKKDYMEGCGDSLDLVPIGAWLGRGKRTGVYGAYLLACFDEDGEE
YQSICKIGTGFSEVILEELANAMNPHVIDGPRSYYKVSDAMKPDVWFEPKQVWEVKAADL
SISPVHQAACGLVDPQKGIALRFPRFLRRRDDKEPEMATNSEQVAEFYNAQANKQEFNAN
GDDD
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgcccaaggcgaaggcgaaggcgaagaccaaggcgaagaaggaagaaccggccacggct
gggctcggagacaagtccgtggaggcggcggagcggtatttggagtatgatccggtgtcg
aaggtgacgtggaagctcggcgacgcgacgccgtatttgtatctcgcgaatattttcgag
tccatcgcggaaacgacgaaaagattggagatcgcggagctgctgacaaatgctttccgg
acgattttagcgagtaaaccgactgatctcttggcggcggtgtacttggcgtcgaacacc
attcatccgcagcacgaaggtatcgacctcggcatcggggatgcgacgctcatcaaggcg
ctcgctgaggccacggggcggaaagacgaatcgattaagaatgactataaggaagctggc
gatcttggaagcgtggccatggcgagtcgttcgacgcagcgcatgatgttcccgccgcca
ccgttgacggtgacgggcgtgctcaaggagtttagagccatcgccacgaccgatggcgaa
aagagcgtcgatcgcaagaaaggtatgatcaagaagctcctcgtctccgcgcgcgagtgc
gaggcgggttacgtcattcgctcgctccaaggtaaactacgaatcggcctcgctcaacag
acggtgacgcaaagtctcgcgcacgccatcgtcttgcacggcgacgccggaaagaagaag
aagggcgccgagctcgccgatgccttgggtgcagcattcgacgtgctcaagcaagtattt
agcgaatgtccgacttttgatcaaatcgtcccggcgctacttgaggttggtatcgaaggc
ttgcaagagcgttgcaaattcaccccgggtgtccccgtcaagccgatgttagccaagcct
acgactggggtgtctgaagtgttgaagcgcttcgaagacatcgcgtttacgtgtgaatac
aagtacgatggagagcgcgcgcagattcacctccaagaaaatggcaaggtgtccatcttc
tcccgcaaccaagaggacaacacggccaagtttcccgatctcataaacggtctcaagcga
tacatcaagcctcatgtgaagtctgtcgtcatcgactgcgaagccgttgcatacgataga
gaacaaaacaagatcttgccgttccagattttgagcacgcgaggaaagaaaaacatcgtt
gaatcggagatcaaagtcaaagtcgctctctacgcgtttgactgcctgtacctcaacggc
gaaccgctgttgcgcgagccgatgcacaagcgccgcgaagcactttacagcgcattccaa
gaagttcccggcgaattcttcttcgtcaccgagaagacatctcgcgatatcgatgaactg
caaggatttttggacgaatctatcgcagagaacaccgaaggtttgattgtcaagacgctc
gacgcgacgtacgaaccgtccaagcgctccctcaactggcttaagctcaagaaggattac
atggaaggctgcggtgactcattagatttagttccaatcggcgcttggctcggacgcggt
aagcgtacgggcgtttatggcgcgtacttactcgcctgtttcgacgaagacggcgaagag
taccaatccatctgtaaaataggcaccggcttcagcgaagtcatcctcgaggaattggcc
aacgccatgaacccacacgtcatagacggtccgcgttcgtactacaaggtatccgacgcc
atgaaacccgacgtgtggttcgaaccgaagcaagtgtgggaagtcaaagccgccgacttg
tcaatctctccggttcaccaagccgcgtgtggattggtcgatccgcaaaagggcatcgcg
ctgcgctttcctcgcttcttacgtcgccgcgacgacaaagagcccgagatggcgaccaac
tccgagcaagtcgccgagttttacaacgcccaggccaacaagcaagagtttaacgccaac
ggagatgacgattaa

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