Ostreococcus lucimarinus: OSTLU_41034
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Entry
OSTLU_41034 CDS
T01029
Name
(RefSeq) predicted protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
olu
Ostreococcus lucimarinus
Pathway
olu03022
Basal transcription factors
olu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
olu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OSTLU_41034
09124 Replication and repair
03420 Nucleotide excision repair
OSTLU_41034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
olu03021
]
OSTLU_41034
03400 DNA repair and recombination proteins [BR:
olu03400
]
OSTLU_41034
Transcription machinery [BR:
olu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OSTLU_41034
DNA repair and recombination proteins [BR:
olu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OSTLU_41034
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
Motif
Other DBs
NCBI-GeneID:
5002331
NCBI-ProteinID:
XP_001418454
JGI:
41034
UniProt:
A4RYU4
LinkDB
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Position
6:complement(350603..351826)
Genome browser
AA seq
407 aa
AA seq
DB search
MTSVEAAYGAEGANGDDDDDDVDAEDAQRALRAWEKKYQSERAWEDLEEDPVTGRLRVTS
EAQTAKARERRAKMAALATSAGAAKGMIRFTYVVVDLSRAANEEDFRPNRLSVVGQCATS
FIREYFNQNPLSQLGIIVARNGVAERLTELSGSPEAHAAALRNALDASGDFSLQNTLNVA
RTSLKSIPSYGSREVLYIVSSLSTCDPGNVWTEIAATKAAKVRVSVVAVAAELHVSRRLT
EETGGTYGVSLNADHLDDLIMAHAPPPPLPEDATKSSLVQMGFPQKKHLSKDALVVGTGG
EYVCPRCSGRIDELPSQCAVCRLTLVSSPHLARSYHHLFPVAPFKEYTRDEASAKEVLEC
KACLALIKQTDPASKCEQCSNVFCFACDCYIHEKLHNCPHCTCEREN
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcggttgaagccgcgtacggcgccgagggcgcgaacggagacgatgacgacgac
gacgtcgacgcggaggacgcccagcgcgcgctgcgcgcgtgggagaagaagtaccagagc
gaacgggcgtgggaagacttggaggaagacccggtgacgggacgcctgcgcgtcacgagc
gaggcgcagacggccaaggcgcgcgaacggcgcgcgaagatggcggcgctcgcgacgagc
gcgggagcggcgaagggaatgattcggttcacgtacgtggtggtcgatctgtcgcgggcg
gcgaacgaggaagactttcgaccgaaccggttgagcgtggtcggacagtgcgcgacgtcg
ttcatacgggaatatttcaatcagaatccgctatcgcagttggggatcatcgtcgcgagg
aatggggtggccgaacggttgacggagctgagcgggagtccggaggcgcacgcggcggcg
ctgagaaacgcgctggacgcgagcggggattttagtttgcaaaatacgctaaacgtcgcg
aggacgtcgttgaaatcgattccgtcgtacggaagtcgtgaggtgctctatatcgtgagt
tcgttgtcgacgtgtgatcctggaaatgtgtggacagagatcgcggcgacgaaggcggcc
aaggtgcgcgtgagcgtcgtcgccgtggcggcggagcttcacgtcagtcgacggctgaca
gaggagactggaggaacgtacggggtgagcttaaacgccgaccatttggatgatttaatc
atggcgcacgcaccgccgccgccgctccccgaagacgcgacgaagtcgagcttggtacaa
atgggatttccgcaaaagaagcacttgagtaaggacgcgctcgtggtcggaacggggggt
gaatacgtgtgtcctaggtgctctgggagaatcgatgaacttccttcgcagtgtgcggtg
tgtcgtttgacgctcgtgtcgtcaccacatctcgcgcgatcgtaccatcacctgtttccc
gtcgccccgttcaaggagtacacgcgcgacgaggcttcagcgaaggaggtgttggagtgt
aaagcatgcctcgcgcttatcaagcaaacagatccagcatccaagtgtgagcagtgttct
aacgtgttttgcttcgcttgcgattgctacattcacgaaaagctgcacaactgcccgcat
tgcacttgcgagcgagagaattga
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