Oenanthe melanoleuca (Eastern black-eared wheatear): 130252807
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Entry
130252807 CDS
T09236
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Pathway
oma03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
130252807 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oma03400
]
130252807 (LIG4)
Enzymes [BR:
oma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130252807 (LIG4)
DNA repair and recombination proteins [BR:
oma03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
130252807 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
130252807
NCBI-ProteinID:
XP_056346750
LinkDB
All DBs
Position
1:complement(77866052..77870271)
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AA seq
912 aa
AA seq
DB search
MASAPASQTPPKKTVASQVPFAHLCFTLERMQKCKSRPEKTKHFKDFLDSWRRFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAARLLNYRTP
TGSRGDAGDFAMIAYFVLKHRSPKEGRLTIEQVNEHLDVIANNNVAKNKGQLKKSLLQLI
SQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRELHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMGNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVKGRIHIVHKRSARTRKEVI
DALNDAIDNREEGIMVKDPTSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGA
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLSKHWKPYNRKDPP
GNILCGSEKPEMYIDPCNSVIVQIKAAEIVDSDMYKADCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLHIDENDEPHEKKRKTVSKVRKIIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGTGKYSKSELESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQSKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVAQLR
EVFSRIKDNKAMPLDLIAELEERYWDNSCQLGIFRGSTIYVDCYAVVNVPKSKIPGNALS
IRALELRFYGAKIVPHLEEGVSHVVVGEDRSRVEEMKALRRTFGKKFKIVSELWVTHSVE
EGVAKNENQYLA
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgcttcgcagactcctcctaaaaaaacagtggcctctcaagtgcct
tttgcacatctgtgttttactctggagcgaatgcagaagtgcaaatctcgtccggagaaa
accaagcatttcaaggattttctggattcctggaggagattccatgatgcgcttcaccaa
aaagagaaagatgtcacagattccttttacccagctatgcgactcatactcccacagttg
gaaagagaaaggatggcatatggaattaaagaaaccatgcttgcaaagctctatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaggcttttaaattacagaacgcct
acgggctcacgtggagatgctggagatttcgcaatgattgcatactttgtgctaaaacat
aggagcccaaaagaaggcagactgacaatagagcaagtcaatgaacatttagatgtgata
gctaataataatgttgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
agtcagagcacagcgctggaacagaaatggcttatccgaatgattataaaggatctaaag
ctgggtgttagtcaacaaactatattttccatttttcatcctgatgctgctgaattgcac
aatgttactactgatttagaaaaagtttgcagagaactgcacgatccctctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgggtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcaccccttgaaggttcattaacgccatttatt
cacaatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaacttttatgcaaaaaggtaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacttgcttttgtgtatttgatgtattgatggttaatgatcag
aagttggggcatgaagtcctaagcaaaagatatgaaatcttaagtagtgtatttacccca
gtaaagggcaggatacatattgtccataagagaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgatgcaatagataacagagaggaaggaattatggtgaaagatcccacg
tccacctacaagcctgacaaacgtggggaaggctggttgaaaatcaagccagaatatgtc
aatggactgatggatgaactggaccttttaattgttggtggttactgggggaagggggct
cgtggtggcatgatgtctcattttctatgtgctgttgcagagactccccctccaaatgaa
aaaccaaccattttccactccatttgtcgtgttggctctggctatactatgaaagagttg
tatgatctaggcttgaaactgtctaaacactggaagccctacaataggaaggaccctcct
ggtaacatcttgtgtggaagtgaaaagccggaaatgtacattgatccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtacaaagctgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgact
tcagacatgttagaagatctcagaagcaaagcacaaggaaaactggcctctaagcacctt
catatagatgagaatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aagataattggaatagctgagcagtttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagacgttgagttttgtgttatgacaggaacaggaaaatactcaaag
tctgagctggaaagcagaatagcccaatgtggtggcagtgtggtacagaaccctgggcca
gagacttactgtgtcattgtaggagctgagaatgtcagggtgaaaaacattattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaagcaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgagagtatgattgttatggagacagttacacagcaaacacagatgttgcacagctcagg
gaagtgttctcaagaatcaaagacaataaggcaatgcctctggatttgattgcagagcta
gaagaacgttattgggacaacagctgtcagcttggtatattcaggggaagcaccatttat
gtggactgttatgctgttgttaatgtgcccaaaagcaaaatccctggaaatgcactatca
attagggctttggagctccgtttttatggtgcaaaaatagttcctcaccttgaggagggt
gtctcccatgttgttgtaggagaagatcgttcacgggtggaagaaatgaaagcactcagg
agaacatttgggaaaaaatttaaaattgtgtccgagctgtgggtaacacactcagtggag
gaaggagtcgcaaagaatgaaaatcaatacttagcttaa
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