Oenanthe melanoleuca (Eastern black-eared wheatear): 130254019
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Entry
130254019 CDS
T09236
Symbol
NRDE2
Name
(RefSeq) nuclear exosome regulator NRDE2
KO
K26109
nuclear exosome regulator NRDE2
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oma03019
]
130254019 (NRDE2)
Messenger RNA biogenesis [BR:
oma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
130254019 (NRDE2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NRDE-2
TPR_14
Motif
Other DBs
NCBI-GeneID:
130254019
NCBI-ProteinID:
XP_056349134
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Position
5:complement(44505581..44532738)
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AA seq
1261 aa
AA seq
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MRDKGAGKEGLAMETASRLFPPQFPAPGGSAAEGARSAKAHRKPPASTDPILSPNNPAPP
AILAPGGRTTAPSAPCARRHLAAAARAGGGGGRDMALFPAFAGAAQPGEPPAGSAEGSTR
DLDWLSNPSFSAEDALLLHQRTTEVANLIPEKSPLIRTSSRSELSEESDTDESLKQTSKK
RKKKKKKHHHSKKTKKKTKGDSSSSESEVDTKHIKDKGGGKSSGKEATANLGKKASSVTS
SHSIWLDDIQAPTADTFRIDKKPDPANWAYKSLYRGDIARYKRKGESCLGIDAKKHCITW
DSSASKRKQAQSRPERYFTKNNVKILSTDGILVCNKNSPSDPPAFIPVSQVETEDSSDTT
EVNPLGIYDKSTTVWLQGKGCKSADSESVNTQQTIQEPGINTNSILMTKVEEYNKKVREN
PRDINAWMEFISFQDELMRGPGPYASKGEQESRRKSLKLILEKKLAILERAIESNPSNVD
LKLARLKLCAEFWEPPALIKEWQKLIFLHPNNPEMWKKYLLFCQSQFTTFSVSKINSLYG
KCLTTLAAVQDGSMVSHPLLPGTEEAMLAIFIQQCHFLRQAGHSEKAVSLFQALIDFTFF
KPDSVKDLPTRGQVEFFEPFWDSGEPRIGEKGARGWKAWMHQQEKGGWVIKPDDEDDEEI
DEDQEIKDKTLPKWRIWLDIEYSREARHWLPWRPDKTKKETEEDCEDPERQVLFDDLGPS
LIRLSDPKLQHQLLYSFLQFLGVPCTSKLFPSSLYIAMDENNIFDSVLYDDKPLTSVDFP
LSGFNSIGHMDTMSRGRHQIGHHKEGEEFIQNVFHVLSQIFTGKEKSNLAICWLQYEISK
VIQCLQAKKKKKLKAQGRKSKKLAKNFLKAADNRNNLSLWKLYAYLEWLLGNTDDSRKVF
DTALSTAGTGGLRSAQLCSLSLLYAQLEVELLDTTEGAVTSRAVHILTKLTENGPYVPYS
GQVLPVNVLKARKTYEHALQDYLSRTPVSDQDQVNDTDQLVNLVGCYALFQYLTVGIDAA
VLIYTQASEKLELSGAQKCENSGENSGILNFPTALEAVTLLHTNLLRFHMKISVYPLNPL
REALTEALKRYPSNQSLWRSYIHIQRKSHSASKARRFFDSITRSTNSLEPWLFAIQAEQM
RKKLTEKVQRADVGEIHCTIPETGLTNRIVALFEHAIQSENGAHCPLLWRMYLNFMASLG
KKEKSKGLFYKALQNCPWAKVLYMDAAEYFPDDLQETLDLMTEKELRVRVPMEELDLLLE
I
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atgagggataagggcgctgggaaggaagggctggctatggaaactgcatcccgcctcttc
ccgccgcagttccctgctccaggcggcagcgcggcggagggtgcgcgatcggcaaaagcc
cacaggaagccgccggccagcactgaccctatcctatccccaaacaaccctgccccgccc
gccatcttggcgccgggcggaagaactaccgctcccagcgcgccctgcgccaggcgccat
cttgccgcggcagctcgggcggggggcggcggcggccgagatatggcgctgttcccggcc
ttcgccggggccgcgcagcccggggagccccccgccggcagcgccgagggctccacgaga
gatttagactggctcagtaacccaagcttctctgcagaagatgcgctattattgcaccaa
cgcactacagaagttgccaatctcattcctgaaaagtcaccattaataaggacttcttca
agatctgagttgtcagaagagagtgatacagatgagagtctgaaacagacaagtaagaaa
agaaaaaagaaaaaaaaaaagcatcaccacagtaaaaagacaaaaaagaaaaccaaaggg
gattccagtagcagtgaatcagaggtggacactaagcacatcaaggacaaaggaggtggc
aaaagtagtggaaaggaagcaacagcaaatctaggtaagaaagcatcaagtgttaccagc
agtcactctatttggctggatgatatccaggcccccactgcagacaccttccggatagac
aagaaaccagaccctgcaaactgggcctacaaatccttgtatcgtggggacattgcaagg
tataaaaggaaaggagagtcctgtcttggcatagatgcaaagaaacactgtataacttgg
gacagttctgcatcaaaaaggaagcaagcacagagtcgacctgagcgctactttacaaag
aacaatgtgaagattctgagcacagatgggattcttgtttgtaataaaaattctccatct
gatccacctgcttttataccagtttcccaagtggaaactgaggattcttctgacacaaca
gaagtaaatcctcttgggatttatgataaatcaaccacagtgtggctacaaggaaaaggg
tgcaagagtgcagacagcgagtctgtaaatacacagcaaacaattcaagagcctgggata
aatacaaactccattttaatgacaaaagtggaagaatataacaagaaggtcagagaaaac
ccaagagatattaatgcttggatggaatttatttcctttcaggatgaattaatgagagga
cctggcccttatgccagtaagggagagcaggaatcaaggagaaaatcactcaagttaatc
ttggaaaagaaactggccattttagagcgggcaattgaaagcaatccaagtaatgttgat
ctgaaacttgccaggctgaagctttgcgcagaattctgggaaccaccagctttgatcaaa
gaatggcagaagctaatttttttacatcccaataatccagagatgtggaagaaatacctt
ctgttctgtcaaagtcagttcactactttttcagtttcaaagatcaacagtctctatgga
aaatgtttgacaacactggcagctgtacaggatggcagcatggtatcccatcctcttctg
cctggcacagaagaagctatgctggctatatttattcagcaatgccactttctgagacag
gctggccattctgagaaagcagtgtctttgtttcaggctctgattgacttcaccttcttt
aaacctgacagtgtaaaagatctgccaacaaggggacaggtggaattctttgaacccttt
tgggatagtggagaaccacgaattggagaaaaaggagcaagaggctggaaagcatggatg
caccaacaagaaaagggtggctgggttataaagcctgatgatgaggatgatgaagagatc
gatgaggatcaagaaataaaagataaaactcttcccaagtggcgtatttggttggatatt
gaatattcccgtgaggcaaggcactggttaccttggaggccagacaaaaccaaaaaggaa
actgaagaagattgtgaagatccagaaagacaggtgttatttgatgatcttggaccatct
ttaatccgtctttctgatccaaagcttcaacatcaactcttgtactcttttttgcaattc
ctgggagttccatgtacaagtaaactcttcccttccagtctctatattgccatggatgaa
aacaacatctttgacagtgtgctttatgatgataaaccgctgacttctgttgattttcca
ctttctggattcaacagtattggtcacatggatacgatgtcacgaggcagacatcagata
ggccaccataaagaaggagaggagttcatacagaatgtcttccatgttctgtcccagata
tttacaggaaaggaaaaatctaacctggccatttgttggctacagtatgaaatatccaag
gtaattcagtgtctccaagctaaaaagaaaaagaagctaaaagcacaagggaggaagagt
aagaagctggccaagaatttccttaaagcagctgacaaccgaaacaacctttctctctgg
aaactctatgcctacctagaatggctgcttggtaacacagatgattccaggaaggtgttt
gacacagctcttagcacagcagggacaggaggattgaggagtgcccagctctgcagcctc
agcctgctttatgctcagctggaagtggaactgctggacactacagaaggagctgttacg
tcacgtgctgttcatatattgaccaaactgactgaaaatggaccatatgtgccctatagt
ggacaagtgttacctgtgaatgtcttgaaagctcgtaaaacatatgagcatgcactgcaa
gattatttaagcagaacaccagtttctgatcaggatcaggtcaatgatactgatcagctg
gttaacctggttggttgttatgcactgttccagtatttgactgttgggattgatgctgca
gtattaatatatacacaggcttcagaaaaacttgaactttctggtgcacagaaatgtgaa
aattctggagagaattctggcattctaaattttcccactgctctggaagctgtcacactg
ctgcatacaaatttactgagattccacatgaaaattagtgtttatcctttgaatcccctg
cgagaggcactgacggaggctctgaaacggtatcctagcaaccagtctctttggaggtca
tacatccacatccaaaggaagtctcacagtgcgagcaaagcacgaagattttttgatagt
atcacaaggtctactaactctttagagccatggctgtttgcaatacaagcagagcagatg
agaaaaaaactcactgagaaggtccagagggcagatgttggtgaaatacattgtactatt
cctgaaactggattaacgaatcggattgtagctctatttgaacatgcaattcagagtgaa
aatggtgcccattgtccactgctatggagaatgtatttgaactttatggcttcactagga
aaaaaagaaaaaagtaaaggattgttttataaagcccttcaaaactgtccttgggcaaag
gtactctacatggatgcagcagagtatttccccgatgatctgcaagagacgctcgatcta
atgactgaaaaagaactgagagtgcgggtacctatggaagagttggatctactactagag
atttaa
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