Oenanthe melanoleuca (Eastern black-eared wheatear): 130260165
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Entry
130260165 CDS
T09236
Symbol
RC3H2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
oma
Oenanthe melanoleuca (Eastern black-eared wheatear)
Brite
KEGG Orthology (KO) [BR:
oma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
oma03000
]
130260165 (RC3H2)
04121 Ubiquitin system [BR:
oma04121
]
130260165 (RC3H2)
Transcription factors [BR:
oma03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130260165 (RC3H2)
Ubiquitin system [BR:
oma04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130260165 (RC3H2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
zf-CCCH_4
zf-C3HC4_3
Prok-RING_4
zf-C3HC4
zf_CCCH_4
zf-C3HC4_4
zf-C3HC4_2
Xin
Motif
Other DBs
NCBI-GeneID:
130260165
NCBI-ProteinID:
XP_056361294
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All DBs
Position
17:1933369..1959558
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AA seq
1191 aa
AA seq
DB search
MPVQAAQWTEFLSCPICYNEFDENVHKPISLGCSHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDHQTVKLSNVGENKHYEVAKKCVEDLALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRSYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLNRLRPHLELLANI
DPNPDAASPTWEQLENAMVAVKTVVHGLVDFIQNYSRKGHETPQPQPNSKYKTSMCRDLR
QQGGCPRGTNCTFAHSQEELEKYRLRNKKISSTVRTFPLLNKVGVNSSVSTTTGNVISVI
GSPEATGKMVPSTNGIANLETGVPQLIPRCADTSLRALENTKKGGKTGANGQNASGSPTE
SLPENKIGSPPKTPVSQAAATSAGPPNIGTEVNSVPPKSSPFVPRIPVYPPHSDNVQYFQ
DPRTQLSYEVPQYPQTGYYPAPPTVPAGVAPCVPRFVRSNNVPESSLPPASMPYADHYST
FPPRDRLNSPYQPPPPQPYGPVPPVPSGMYAPVYDSRRIWRPQMYPRDDIIRSNSLPPMD
VMHSSVYQTSLRERYNSLDGYYSVACQPPNEQRTVPLPREPCGHLKTGYDEQLRRKPEQW
AQYHTQKTPLVSSTLPMATPSPTPPSPLFSVDFSTEFSESVSDLSGTKFEEDHLSHYSPW
SCGTIGSCINAIDSEPKDVIANSNAVLMDLDSGDVKRRVHLFETQRRAKEEDPIIPFSDG
PIISKWGAISRSSRTGYHTTDPIQATASQGSATKPISVSDYVPYVNAVDSRWSAYGSDSA
SSARYAERDRFIVTDLSAHRKHSSTGDLLSIELQQAKSNSLLLQREANALAMQQKWNSLD
EGSRLTLNLLSKEIDLRNGETDYPEDCADTKPDRDIELELSALDTDEPDGQGEQIEEILD
IQLGISSQEDQLLNGTTVENGHLLKQHQKESLEQKRQSLGEDRVILEEQKTILPVTSCFS
QPITTSVSNASCLPISTSVSVGSLTLKTAHIMSEDKNDFLKPVANGRMVNS
NT seq
3576 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcagctcagtggacagaatttctgtcctgcccaatctgctacaatgag
tttgatgagaatgtgcacaaacccatcagcttaggttgctctcacaccgtgtgcaagacc
tgcctgaacaagctccatcgcaaggcatgtccctttgaccagactgccatcaacacggac
atcgacgtgcttcctgtgaactttgcactcctccagctggttggagcccaggtacctgat
catcagacagtaaagttgagtaatgtaggagagaacaaacattatgaagtagcaaagaaa
tgtgttgaggatttggcactctacttaaagccattaagtggaggaaaaggtgttgcaagc
ttgaatcagagtgcactgagccgtcccatgcagaggaagcttgtgacactggtgaattgt
cagctggtggaggaggagggtcgggtcagagccatgagggcagctcggtcgctgggagag
agaactgtcacagaactcatcctgcagcaccaaaatcctcagcagctttctgccaatctt
tgggctgctgtcagggcacgagggtgccagtttctaggaccagctatgcaagaggaggca
ctgaaacttgtattactggcactggaagatggctctgcactctcaagaaaagttctggta
ctttttgttgtgcaaaggctggaaccaaggtttcctcaggcctctaaaacaagcattggt
catgttgtgcagctactgtatagggcatcatgctttaaggtcactaaaagggatgaagat
tcttctctgatgcaacttaaagaagagttccggagttacgaggctttgcggagagagcac
gatgcccaaattgttcacattgccatggaagcaggacttagaatatcaccagagcagtgg
tcttcccttctttatggagacctggcacataaatcacacatgcaatccattattgacaag
cttcaatctccagaatcttttgctaagagtgtacaagaattgacaatagtcttgcagcgc
acaggggatcctgcaaacttaaacaggctgaggcctcatttagagctcctggcaaacata
gatccaaatccagatgcagcatctccaacatgggagcagctggaaaatgcgatggtcgct
gtaaagactgtggtgcatgggctggtggatttcattcagaattacagtagaaaaggccat
gaaactccacagccacaaccaaatagcaaatacaaaacaagtatgtgccgagaccttcga
cagcaaggggggtgtccaagaggaacaaactgtacatttgctcattctcaggaagagctt
gaaaaatatcgcttgaggaacaaaaaaatcagctcaacagtgagaacattcccccttcta
aataaagttggtgtcaacagctctgtctcaaccacaacgggaaatgtgatctctgtcata
ggaagccctgaggcaacaggcaagatggtgccaagtactaatggaatagctaatctagaa
actggggttccccagctgatcccccgctgtgcagacacctctttgagagctctggagaac
accaagaagggagggaagactggagccaatggccagaatgcttctgggtcccctacagaa
tcacttcctgaaaataaaattggttctccacccaagactcctgtaagccaggcagcagct
acctcagctggtccacctaatattggaacagaagttaattccgtgcctcccaaatccagc
ccgttcgttcccagaatacctgtctatcctccacattctgataatgttcaatatttccaa
gaccccaggactcagctgtcatatgaagttccacagtacccacagacaggatattatcca
gcacctccaacagtaccagctggtgtggctccctgtgttcctcgctttgtgaggtccaat
aacgttccagaatcctccctcccacctgcttccatgccatatgccgatcattacagcacg
tttccccctcgggatcggctgaactctccctaccagcctcctcccccgcagccctacggg
cccgtccctcctgtcccctctggaatgtacgctccggtttatgacagcaggcgcatctgg
cgcccacagatgtacccacgagatgatatcattaggagcaattcgttacctcccatggat
gtgatgcactcatctgtctatcagacatcattacgggagaggtacaactcactggatggg
tattactctgtggcttgtcaacctccaaatgagcagaggactgtgcctttaccaagggag
ccttgtggtcatttgaagactggttatgatgagcagctgagacggaagccagaacagtgg
gcacagtaccacacacagaaaactcctctggtatcgtcaacccttcctatggcaacacca
tctccaacaccaccttctcctctcttcagtgtagatttcagcacagagttctcagagagt
gtcagtgatttgagtggaactaaatttgaggaagaccatctctctcactattcaccgtgg
tcttgtggcactattggctcttgtataaatgctatcgactcagagcccaaggatgtgatt
gccaattccaatgccgtgttaatggatttggacagtggggatgttaaaaggagagtgcat
ttatttgaaacacagagaagggcaaaggaggaagatcctataatcccgttcagcgatgga
cccatcatctccaagtggggtgcaatctccaggtcatcccgcacaggttatcacacaaca
gatccaatccaggccactgcttcccaaggaagtgctactaaacccattagtgtatcagat
tatgtcccttatgtcaatgctgtagactcaagatggagtgcctatggctcagattctgcc
tcctcagcacgttatgcagaacgggacagattcatagttacagatttgtctgctcacaga
aagcattccagcactggagatctactgagtattgaattacagcaggctaaaagcaactcc
ttactccttcagagagaggcaaatgcacttgccatgcagcagaagtggaattctctagat
gaaggcagtcgtcttaccttaaaccttttaagcaaggaaattgatttgaggaatggtgag
actgattatcctgaagactgtgcagacacgaagccagaccgagacattgaattggagctg
tcagccctcgatacagatgaacctgatgggcaaggtgaacagatagaagagattctggac
atacagctagggattagctcccaagaggatcaactgctcaatggaacaaccgtagagaat
gggcatctgctaaagcagcaccagaaagaatctctggaacagaagagacaaagtttaggt
gaagatcgtgtgattctggaggagcagaaaacaatcctgcccgtaacttcttgcttcagt
cagccgatcacaacatctgttagcaatgcaagctgcctgcccatcagcacatcagtcagt
gttggcagcctcactttgaaaactgctcacattatgtctgaggataaaaatgacttttta
aagcctgttgcaaatggcaggatggttaacagctga
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