Oryzias melastigma (Indian medaka): 112141112
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Entry
112141112 CDS
T07439
Name
(RefSeq) tripartite motif-containing protein 16
KO
K12006
tripartite motif-containing protein 16
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112141112
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112141112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
SPRY
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-RING_10
U-box
zf-RING_5
Baculo_IE-1
Prok-RING_4
zf-RING_6
zf-RING_11
DivIC
LMBR1
C5HCH
Motif
Other DBs
NCBI-GeneID:
112141112
NCBI-ProteinID:
XP_024119936
LinkDB
All DBs
Position
Unknown
AA seq
552 aa
AA seq
DB search
MSQKGVDLDQETFSCSICVDLLKDPVTIPCGHSYCMKCIEGFWDEEEKIPSCPQCRETFT
PRPVLVKNFMFAALVEQLKKTGLQAAPAADHCYAGPEDVSCDVCSGRKLKAIKSCLFCLA
SYCEKHLQPHLDEAAFKKHKLVEPSKNLQENICSIHDEVMKMFCRTDQKCICYLCSVDEH
RGHDTVSAAAERTERQRDLEESQQQIQQRIQDREKEVKLLQQEVEAINHSADQTVKDSEK
IFTQMIRLIQKTSCDVKQQIRSQQQTEVSGVKDLQEELEQEITELKRRDAELKQLSLTED
HSQFLLNYVSLPPLSESTHSSSINVRPLRYFEDVTAAVSELRDKLQDILREEWTNISLTL
THVDVLLSEPKSRADFFRYSCQISLDPSTADKHLLLSEENRKVTLMKKPQFDSDHPDRFT
YCVQVLSRESLTGRCYWEVEWRGKCVRVAVSYKNISRSGIESGFGYNDKSWALICSPDSF
SFHHNSIKTSISAPGSSRVGVYLDHRAGVLSFYSVSESMTLLHRVQTTFTQNLHAGLGLG
YSGDSAEFCKLK
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagaaaggagtggatctggatcaagaaaccttcagctgttccatctgtgtggat
ctgctgaaggatccggtgactattccctgtggacacagctactgcatgaaatgtattgaa
ggattctgggatgaagaggagaaaattcccagctgtcctcagtgtagggagaccttcaca
ccgaggcctgttctggtgaaaaacttcatgtttgctgctttagtggagcagctgaagaag
actggactccaagctgctcctgctgctgatcactgctatgctggacctgaagatgtgtcc
tgtgatgtttgttctggaagaaaactcaaagccatcaagtcctgtttgttctgtctggcc
tcttactgtgagaaacaccttcagcctcatttggatgaagctgcattcaagaaacacaag
ctggtggaaccctccaagaacctgcaggagaacatctgctccattcatgatgaggtgatg
aagatgttctgtcgcactgatcagaagtgtatctgttatctctgctctgtggatgaacat
agaggacatgacacagtctcagctgcagcagaaaggactgagaggcagagagatctggag
gagagtcaacaacaaatccagcagagaatccaggacagagagaaggaggtgaagctgctt
caacaggaggtggaggccatcaatcactctgctgatcaaacagtgaaggacagtgagaag
atcttcactcagatgatccgtctcatccagaagacaagctgtgatgtgaagcagcagatc
agatcccagcagcaaactgaagtgagtggagtcaaagatcttcaggaggagctggagcag
gagatcactgagctgaagaggagagacgctgagctgaagcagctctcactcacagaggat
cacagccagtttctgctcaactacgtctcactgccaccactcagtgagtccacacactca
tccagcatcaatgtccgtcctctcagatactttgaggatgtgacagcagctgtgtcagag
ctcagagacaaactgcaggacattctgagagaggaatggacaaacatctcactgacactc
actcatgtggatgttttactgtcagagccaaagagcagagctgacttcttcagatattca
tgtcaaatctcactagatccaagcacagcagacaaacatctgttactgtcagaggagaac
agaaaggtgacattgatgaaaaaacctcagtttgattctgatcatccagacagatttact
tattgtgttcaggttctgagtagagagagtctgactggacgttgttactgggaggtggag
tggagaggaaaatgtgttcgtgtagcagtctcatacaagaacatcagtagatctggaata
gaaagtggatttggttataatgacaaatcttgggcattaatttgttctccagacagtttc
tcatttcaccacaacagcataaaaacctccatctcagctcctggttcctccagagtagga
gtgtacctggatcacagagcaggtgttctgtccttctacagcgtctctgaaagcatgact
ctcctccacagagtccagaccacattcactcagaaccttcatgctggactggggttgggt
tattctggagactcagcagagttctgtaaactcaaatag
DBGET
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