Oryzias melastigma (Indian medaka): 112141720
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Entry
112141720 CDS
T07439
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112141720 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112141720 (ddx46)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112141720 (ddx46)
Spliceosome [BR:
oml03041
]
Complex A
U2 snRNP components
U2 related factors
112141720 (ddx46)
Complex B
112141720 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
112141720
NCBI-ProteinID:
XP_024120640
Ensembl:
ENSOMEG00000003338
LinkDB
All DBs
Position
LG14:23531011..23545364
Genome browser
AA seq
1062 aa
AA seq
DB search
MGRESRYAHYRKRSASRGRSGSRSKSRSPEKRSKKDDRDRNRRDRSRSRDRRRSRSRDRK
RARRSRSRDRRRSRSRDRKRSSSRSRARRSRSGSAGKSKKTDEKPKSKEKDSVDPVSEKK
KVKEEKEDEKTEDQDFDQNKLEEEMRKRKERVEKWREEQRKKAIENIGEIKKELEEMKQG
KKWSLEDDDDDDEDNSAVMEVEDDDSADGKEEGKEKEIKEEKKEDGDQEKETPMEEQTEE
DEVDPLDAYMEEVKQEVKKFNMSDMKGNDKKGAMMVTKVVTVVKTKKGASTHKKKGELME
NDQDAMEYSSEEEEVDLQTALTGFQTKQRKILEPVDHAKIQYESYRKNFYVEVPELAKMT
TEEVNAHRLELEGITVKGKGCPKPIKTWVQCGVSMKILAALKKQGYEKPTPIQAQAIPAI
MSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRPLEESEGPISVIMTPTRELALQITKECK
KFSKALGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYV
VLDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILAKPIEVQVGGR
SVVCSDVEQHVLVIDEDQKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKASYPC
LSLHGGIDQYDRDSIINDFKNGVCRLMVATSVAARGLDVKQLILVVNYNCPNHYEDYVHR
AGRTGRAGNKGYAYTFITEDQVRYAGDIIKALELSGSPVPPELEQLWASFKDQQKAEGKT
IKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIEEQIESMFNSKKR
VKDLSAPGAAGGAGGVVSAAAASPGALGFAPTSAGNNQKLEMAKKLALKINAQKNLGAEA
QDVMQQATNAILRGGPIVTPSVSAKTIAEQLAEKINAKLNYTPVEKLEEEKQAAEQAETV
RRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLA
IESANELAVQKAKTEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgggacgtgagtcaaggtatgcgcattataggaaacgctctgcgtctcggggacggtcc
ggttcccgttcgaagagtcggtcccccgaaaaacgctccaaaaaagatgacagagaccga
aacaggagggacaggtcacggagccgcgaccgtcggagatcccggtccagagacagaaaa
cgagccaggcgctcccgaagcagagacaggaggaggtccaggagccgcgacagaaagagg
tcatccagcaggagtcgagcccggaggtcccgatccggcagcgcaggaaagagcaagaaa
acagacgaaaagcccaaaagcaaagagaaagacagtgttgatcccgtctcggagaagaag
aaagtgaaagaggagaaagaggatgagaagacagaggatcaagactttgaccaaaacaaa
ctggaggaggagatgaggaaaaggaaggagcgagtggagaaatggagagaggagcagagg
aagaaagctatcgaaaacatcggagagatcaagaaagagttggaggaaatgaagcagggc
aaaaagtggagcttggaggatgatgatgatgatgatgaggacaactcagcagtgatggag
gtagaggacgacgacagcgcagatgggaaagaagaaggaaaagaaaaggagataaaggag
gaaaagaaggaggatggggatcaggagaaggagactcctatggaggagcagacagaggag
gatgaagtggatcctctggatgcgtacatggaggaggtgaagcaggaggtgaagaagttc
aacatgagtgacatgaaagggaatgacaaaaagggcgcaatgatggtaactaaagttgtg
acggttgtcaaaaccaaaaaaggagccagcactcacaagaagaagggcgagctgatggag
aacgaccaggatgccatggagtactcatcagaggaggaggaggtggacttgcagacagcc
ctgacaggttttcagaccaaacagaggaagattctggagcctgtcgaccacgcaaagatc
cagtatgagtcctaccgcaaaaacttctacgtggaggttcctgagctggcaaaaatgacg
acagaggaggtgaatgcgcacagattagaactggaaggcattactgtgaaaggaaaaggc
tgtcctaaacccatcaagacctgggtgcagtgcggggtgtcgatgaaaatcctcgccgct
ctgaagaagcagggctacgagaaacccacgcccatccaggctcaggccatccccgccatc
atgtcgggtcgtgacctcattggcattgccaagacgggcagcgggaaaaccatcgcgttc
ctgctcccgatgttccgacacatcatggaccagaggcccctggaggagtctgagggaccc
atctctgtaatcatgactccaaccagagagctggctctgcagatcacaaaggagtgcaag
aagttctccaaagcgctcggactcagagtggtgtgtgtttacggggggacaggcatcagc
gaacagattgcagagctgaagagaggagctgaaatcatcgtgtgcaccccaggaagaatg
attgacatgctgggggccaacagcggccgggttaccaacctgcgcagagtgacatatgtg
gttctggatgaagctgacaggatgttcgacatggggtttgaaccccaggtgatgcgtatc
gtggataacgtgcgtccagaccgacagaccgtcatgttctcagcgaccttccccagagcc
atggaggcgctggctcgaaggatcctcgccaagcccatcgaggtgcaggtgggcggccgt
agcgtcgtctgctctgacgtggagcaacatgtgctcgtgattgacgaggatcagaagttc
ctgaagctgctggagattttgggtcactaccaggagaaaggatcggtcatcatctttgtg
gacaaacaggagcacgctgacggtctgctgaaagacctgatgaaggcctcctacccctgc
ctgtctttacatggaggaatcgatcagtacgacagggacagcatcatcaacgactttaag
aacggggtttgtcgcttgatggtggccacttctgtggcagccagaggcctggacgtcaag
cagctgatcctggtggtcaactacaactgtcccaaccactacgaggactacgtccaccgg
gcggggcgcacgggcagagccggcaacaagggatatgcctacacgttcatcacagaggat
caggttcgctatgcgggggatatcatcaaggcgttggagctctcgggttctcctgtcccc
ccagaactggaacagctttgggcctccttcaaagaccagcagaaagcggagggtaagacc
attaagagcagcagtggcttctcaggaaaaggttttaagttcgatgagaccgaacatgcc
ttagctaacgagaggaagaagctgcagaaagctgccctcgggttgcaggactctgacgac
gaggacggcgccctggatatcgaggagcaaattgaaagtatgtttaattctaagaagagg
gtgaaggatctgtctgcacctggagcagctggtggcgctggcggagtggtttctgcagca
gcagcttctcccggagctctcggtttcgcgcctacgtctgctggaaacaaccagaaactg
gagatggccaaaaaactggctctcaagatcaacgctcagaagaatctgggcgcagaagct
caggatgtgatgcagcaggccactaacgccattttacgtggaggacccattgtgactccc
tccgtgtcggccaagaccattgcagaacagctggcagagaagatcaatgctaagctgaac
tacacacccgtggagaagctggaggaggagaagcaggcggccgaacaggccgaaactgtc
aggagatacgaagaagagctggagatcaatgacttcccacagacggccaggtggaaggtg
acgtccaaagaggctctgcagaggatcggtgaatactctgaggcagctatcaccatcagg
ggaacatatttccctccaggaaaagaacccaaagagggagaacgtaaaatttatctggct
attgagagtgcaaatgaacttgccgtgcaaaaagctaaaacagagattacacggctcatc
aaagaggagctcatcagattacaaaattcctaccagccgacgagcaaaggccggtacaaa
gtgttgtag
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