Oryzias melastigma (Indian medaka): 112144725
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Entry
112144725 CDS
T07439
Symbol
ddx19
Name
(RefSeq) ATP-dependent RNA helicase DDX19B
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112144725 (ddx19)
03015 mRNA surveillance pathway
112144725 (ddx19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112144725 (ddx19)
Enzymes [BR:
oml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
112144725 (ddx19)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
112144725 (ddx19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
PP-binding
Motif
Other DBs
NCBI-GeneID:
112144725
NCBI-ProteinID:
XP_024125209
Ensembl:
ENSOMEG00000018968
LinkDB
All DBs
Position
LG5:complement(10678588..10686647)
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AA seq
488 aa
AA seq
DB search
MATDSWAQAVDEQEAAAESIGNLQIKDKSGENGVLAGAGESSNKAPKPVAEGENKNAEED
DSDDKAAQSLLNKLIRNNLVNTTNQVEVLQKDPNSPLYSVKSFEELHLKPQLLQGVYAMG
FNRPSKIQETALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSHVDPNNTFPQCLCVSPT
YELALQTGKVIEQMGKYYPEVKLVYAIRGNKLQRGMKLQEQIVIGTPGTMLDWCSKFKFI
DPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPKNCQMLLFSATFEESVWNFAQRIVPE
PNIIKLKREEETLDTIKQYYVLCNSKEEKFQALCNIYGAITIAQAMIFCHTRKTAGWLAG
ELSREGHQVALLSGEMQVEQRAAVIERFRDGKEKVLVTTNVCARGIDVEQVSVVINFDLP
VDKDGNPDNETYLHRIGRTGRFGKRGLAINMVDSRMSMNILNRIQEHFNKKIERLDTDDL
DEIEKIAS
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggctacggactcttgggcacaggcggtagacgagcaagaggctgcggcagaatcgatc
gggaatcttcaaataaaggacaaatctggagaaaatggcgtgcttgcaggagcaggtgaa
tcaagcaacaaagctcccaaacctgttgctgaaggagaaaacaagaacgcagaagaggac
gatagtgatgataaagcggcgcagtcgttgctaaacaaactcatccggaataatcttgtc
aatacaacaaatcaagtggaagttcttcagaaagatcctaattctccgctgtactctgta
aagtcttttgaagaattgcatcttaaacctcagctgctccaaggagtttatgcaatggga
tttaacagaccatccaaaatccaggaaacagctttacccatgatgctggcagaacctcca
cagaatctgattgctcagtctcagtcggggacggggaagacggccgcttttgtcctggcc
atgctcagccatgttgaccccaataatacatttcctcagtgtctgtgtgtgtcgcccact
tatgagctggcgctgcagactggcaaagtgatcgagcagatgggcaaatattaccctgaa
gtcaaactggtttatgccattagaggaaataaattgcagcgaggtatgaaactacaggaa
cagatcgtcatcggcactcccggtaccatgctggactggtgcagcaagttcaagtttata
gatccaaagaagatcaaagtgtttgttctggacgaagccgacgtcatgatcgccacgcag
ggtcaccaggaccagagtatacgaatccagaggatgctgcctaaaaactgccagatgttg
ctgttttctgctacgttcgaggagtcggtctggaactttgctcagcgcatcgttcctgag
cccaacatcatcaaactgaagagggaggaggagactctggacaccatcaaacagtattat
gtgctgtgtaacagcaaggaggagaagtttcaagctctctgtaacatctacggagccatc
accatcgctcaggccatgatcttctgtcatacgaggaagaccgcaggttggctggctgga
gagctgtccagagaaggccaccaggtggcgttgctcagtggagaaatgcaggtggagcag
agggctgccgtcattgaacgcttcagagacggaaaggagaaagtcctggtgacgacgaat
gtttgtgctcgaggcatcgacgtcgaacaggtttcggtggtaatcaattttgatttgccg
gtggacaaagacggtaaccccgacaacgagacttacctgcacaggattgggcgcacgggt
cgatttgggaagagaggcctggccatcaacatggtggacagccggatgagcatgaacatc
ctcaacaggatccaggagcatttcaataagaagattgaaagattagacaccgacgatttg
gatgaaattgagaaaattgccagctaa
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