Oryzias melastigma (Indian medaka): 112145043
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Entry
112145043 CDS
T07439
Name
(RefSeq) tripartite motif-containing protein 16
KO
K12006
tripartite motif-containing protein 16
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112145043
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112145043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
SPRY
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-RING_5
U-box
zf-RING_10
Prok-RING_4
zf-RING_6
DivIC
LMBR1
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
112145043
NCBI-ProteinID:
XP_024125812
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Position
LG2:complement(14201533..14204232)
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AA seq
558 aa
AA seq
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MAQKGVDLDQETFSCSICLDLLKDPVTIPCGHSYCMKCIEGFWDEEEKIHSCPQCRETFT
PRPVLVKSFMFAALVEQLKKTGLQAAPAADHCYAGPEDVSCDVCSGRKLKAIKSCLICLA
SYCEKHLQPHLDEAAFKKHKLVEPSKNLQENICSIHDEVMKMFCRTDQKCICYLCSVDEH
RGHDTVSAAAERTERQRDLEESQQQIQQRIQDREKEVKLLQQEVEAINHSADQTVKDSEK
IFTQMIHLIQKTSCDVKQQIRSQQQTEVSGVKDLQEELEQEITELKRRDAELKQLSLTED
HSQFLLNYVSLPPLSESTHSSSINVRPLRYFEDVTAAVSELRDKLQDILREEWTNISLTL
THVDVLLSEPEPEPKSRADFFRYSCQITLDPNTAHRKLLLSEENRKVTLMENSQFYSDYP
DRFTDYYCGQILSRESLTGRCYWEVEWRGKYVCVAVSYKNISRSGKESGFGLNDKSWALV
FHSDGFSFHHNSIKTSISAPGSSRVGVYLDHRAGVLSFYSVSESMTLLHRVQTTFTQNLH
AGLWLGYSGDSAEFCKLK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaaaggagtggatctggatcaagaaaccttcagctgttccatctgtctggat
ctgctgaaggatccggtgactattccctgtggacacagctactgcatgaagtgtattgaa
ggattctgggatgaagaggagaaaatccacagctgtcctcagtgtagggagaccttcaca
ccgaggcctgttctggtgaaaagcttcatgtttgctgctttagtggagcagctgaagaag
actggactccaagctgctcctgctgctgatcactgctatgctggacctgaagatgtgtcc
tgtgatgtttgttctggaagaaaactcaaagccatcaagtcctgtttgatctgtctggcc
tcttactgtgagaaacaccttcagcctcatttggatgaagctgcattcaagaaacacaag
ctggtggaaccctccaagaacctgcaggagaacatctgctccattcatgatgaggtgatg
aagatgttctgtcgcactgatcagaagtgtatctgttatctctgctctgtggatgaacat
agaggacatgacacagtctcagctgcagcagaaaggactgagaggcagagagatctggag
gagagtcaacaacaaatccagcagagaatccaggacagagagaaggaggtgaagctgctt
caacaggaggtggaggccatcaatcactctgctgatcaaacagtgaaggacagtgagaag
atcttcactcagatgatccatctcatccagaagacaagctgtgatgtgaagcagcagatc
agatcccagcagcaaactgaagtgagtggagtcaaagatcttcaggaggagctggagcag
gagatcactgagctgaagaggagagacgctgagctgaagcagctctcactcacagaggat
cacagccagtttctgctcaactacgtctcactgccaccactcagtgagtccacacactca
tccagcatcaatgtccgtcctctcagatactttgaggatgtgacagcagctgtgtcagag
ctcagagacaaactgcaggacattctgagagaggaatggacaaacatctcactgacactc
actcatgtggatgttttactgtcagaaccagaaccagaaccaaagagcagagctgacttc
ttcagatattcatgtcaaatcacactagatccaaacacagcacacagaaaactgttactg
tcagaggagaacagaaaggtgacattaatggaaaattctcagttttattctgattatcca
gacagattcactgattattattgtggtcagattctgagtagagagagtctgactggacgt
tgttactgggaggtggagtggagaggaaaatatgtttgtgtagcagtctcatacaagaac
atcagtagatctggaaaagaaagtggatttggtttaaatgacaaatcttgggcattagtt
tttcattcagacggattctcatttcaccacaacagcataaaaacttccatctcagctcct
ggttcctccagagtaggagtgtacctggatcacagagcaggtgttctgtccttctacagc
gtctctgaaagcatgactctcctccacagagtccagaccacattcactcagaacctccat
gctggactgtggttgggttattctggagactcagcagagttctgtaaactcaaatag
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