Oryzias melastigma (Indian medaka): 112145045
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Entry
112145045 CDS
T07439
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K12006
tripartite motif-containing protein 16
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112145045
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112145045
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4_2
SPRY
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-RING_5
U-box
zf-RING_10
C5HCH
Prok-RING_4
zf-RING_11
zf-RING_6
DivIC
LMBR1
Motif
Other DBs
NCBI-GeneID:
112145045
NCBI-ProteinID:
XP_024125816
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Position
LG5:22124819..22127597
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AA seq
554 aa
AA seq
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MAQKGVDLDQETFSCSICLDLLKDPVTIPCGHSYCMKCIEGFWDEEEKIHSCPQCRETFT
PRPVLVKNFMFAALVEQLKKTGLQAAPAADHCYAGPEDVSCDVCSGRKLKAIKSCLFCLA
SYCEKHLQPHLDSDALKKHKLVEPSKNLQENICSIHDEVMKMFCRTDQKCICYLCSVDEH
RGHDTVSAAAERTERQRDLEESQQQIQQRIQDREKEVKLLQQEVEAINHSADQTVKDSEK
IFTQMIHLIQKTSCDVKQQIRSQQQTEVSGVKDLQEELEQEITELKRRDAELKQLSLTED
HSQFLLNYVSLPPLSESTHSSSINVRPLRYFEDVTAAVSELRDKLQDILREEWTNISLTL
THVDVLLSEPKSRADFFRYSCQITLDPNTAHRKLLLSEENRKVTLMENSQFYSDYPDRFT
DYYCGQILSRESLTGRCYWEVEWREKYVCVAVSYKNISRSGKGSGFGCNDKSWALLCSPD
SFSFYHNNIKTSISAPGSSRVGVYLDHRAGVLSFYSVSESMTLLHRVQTTFTQNLHAGLG
LGYSGDSAEFCKLK
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaaaggagtggatctggatcaagaaaccttcagctgttccatctgtctggat
ctgctgaaggatccggtgactattccctgtggacacagctactgcatgaagtgtattgaa
ggattctgggatgaagaggagaaaatccacagctgtcctcagtgtagggagaccttcaca
ccgaggcctgttctggtgaaaaacttcatgtttgctgctttagtggagcagctgaagaag
actggactccaagctgctcctgctgctgatcactgctatgctggacctgaagatgtgtcc
tgtgatgtttgttctggaagaaaactcaaagccatcaagtcctgtttgttctgtctggcc
tcttactgtgagaaacaccttcagcctcatttggattcagatgcactaaagaaacacaag
ctggtggaaccctccaagaacctgcaggagaacatctgctccattcatgatgaggtgatg
aagatgttctgtcgcactgatcagaagtgtatctgttatctctgctctgtggatgaacat
agaggacatgacacagtctcagctgcagcagaaaggactgagaggcagagagatctggag
gagagtcaacaacaaatccagcagagaatccaggacagagagaaggaggtgaagctgctt
caacaggaggtggaggccatcaatcactctgctgatcaaacagtgaaggacagtgagaag
atcttcactcagatgatccatctcatccagaagacaagctgtgatgtgaagcagcagatc
agatcccagcagcaaactgaagtgagtggagtcaaagatcttcaggaggagctggagcag
gagatcactgagctgaagaggagagacgctgagctgaagcagctctcactcacagaggat
cacagccagtttctgctcaactacgtctcactgccaccactcagtgagtccacacactca
tccagcatcaatgtccgtcctctcagatactttgaggatgtgacagcagctgtgtcagag
ctcagagacaaactgcaggacattctgagagaggaatggacaaacatctcactgacactc
actcatgtggatgttttactgtcagaaccaaagagcagagctgacttcttcagatattca
tgtcaaatcacactagatccaaacacagcacacagaaaactgttactgtcagaggagaac
agaaaggtgacattaatggaaaattctcagttttattctgattatccagacagattcact
gattattattgtggtcagattctgagtagagagagtctgactggacgttgttactgggag
gtggagtggagagaaaaatatgtttgtgtagcagtctcatacaagaacatcagtagatct
ggaaaaggaagtggatttggttgtaatgacaaatcttgggcattactttgttctccagac
agtttctcattttaccacaacaacataaaaacctccatctcagctcctggttcctccaga
gtaggagtgtacctggatcacagagcaggtgttctgtccttctacagcgtctctgaaagc
atgactctcctccacagagtccagaccacattcactcagaacctccatgctggactgggg
ttgggttattctggagactcagcagagttctgtaaactcaaatag
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