Oryzias melastigma (Indian medaka): 112145393
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Entry
112145393 CDS
T07439
Symbol
stau1
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1 isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
oml01009
]
112145393 (stau1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112145393 (stau1)
Protein phosphatases and associated proteins [BR:
oml01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112145393 (stau1)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
112145393 (stau1)
mRNA cycle factors
Stress granule specific factors
112145393 (stau1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
112145393
NCBI-ProteinID:
XP_024126345
Ensembl:
ENSOMEG00000002388
LinkDB
All DBs
Position
LG5:complement(30171407..30201663)
Genome browser
AA seq
695 aa
AA seq
DB search
MSQLQFQCPPSSMPAASAPLQLGQPQPGYSIPFAAGALPSESASQPIRTSALPAGSATPY
ITTTVSNMANPKEKTPMCLVNELARFNKIQPEYKLLSEQGPAHSKIFSVRLTLGDQYWEA
EGTSIKKAQHSAAASALAETTLPKPTARSPRNTGKSPAVDGITHTMELNALCMKLGKKPF
YKPIDPYPVMRPPNFNYSVRAPAPYQRSMQQYYYPFPPMGPMIYHMELSIGGQQFMGKGR
TRQLAKHDAAAKALKTLLKEPMLQQMPPVMNGDPEEENLNKSEISQVFEIALKRNLPVNF
EVLKEEGPPHMKMFLVRVAVGEFVGEGEGKSKKIAKKLAAAAVLGELKKLPHIPIVEKTL
PRIKKKTKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYSLVIERGLPRRREFVMQ
VSACGQTAEGMGPSKKVAKRNAAEKMLELLGFKVPQPQPPKPALKTDEKTPVKKPGDGRK
VTFYEPSCVEDVALSPKEEDYRLPYLSHQQLPAGILPMVPEVAQAVGACQGPHAKDYSRA
IPNPGKATITAMIANELLYAGASLTAETILKNKNNLNKLPLGPLTRPSEQLGYLASVQGL
QVEYKDFPKNNKNEFVSLINCSSLPPLISHGIGKDVESCHDMAALNILKMLSEFDQQSSE
KVGNGPTAGSVKQKVDGESHIKPANSSTQTLDGKA
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgtctcagctccagtttcagtgtccacctagctccatgcctgctgcctctgccccactg
cagctggggcagccccagcctggctatagcatcccctttgccgcaggagctctgccgtcg
gagagcgccagtcaaccaatcaggacttccgctcttccagcaggctcggccactccctat
attaccaccacagtgtctaacatggcaaaccctaaagagaagacccccatgtgtttggtg
aatgagttagcccgtttcaacaagatccagcccgagtacaaactgctttctgagcaagga
ccagctcactctaagattttttccgtgaggctgacactgggagatcagtattgggaggca
gaggggaccagtatcaaaaaagcccagcattccgccgctgcatctgctcttgctgaaaca
acacttccaaagcccaccgccagatccccccgcaacacaggcaagagcccagcagtagat
ggcatcacacataccatggaactgaatgcactttgtatgaagcttggtaaaaaacctttt
tataaacccattgatccgtacccagtgatgagaccaccaaacttcaactacagcgtccgt
gctccagcgccgtaccagcgctctatgcaacagtactactatccatttcctccaatggga
ccaatgatttaccacatggagctttccattggaggtcagcagttcatggggaaaggacgc
acacggcagctggccaaacacgacgctgctgctaaagccttgaaaacattgctgaaggag
ccgatgctgcaacagatgccaccagtgatgaatggggatcctgaagaggagaacctgaac
aaatcagaaatcagtcaagtgtttgagatcgctctaaaacgaaacttacctgtcaacttt
gaggttttaaaagaagagggccctccacacatgaaaatgtttctggtgcgcgttgcagtc
ggggagttcgtgggagaaggtgaaggaaaaagtaaaaagattgccaaaaagctcgcagca
gccgccgtgctgggagagttgaagaaattgccccacataccgattgtggaaaagacgctg
ccacgcatcaaaaagaaaaccaaatctataatcaagctgcagaccagcccagagtacggc
cagggaatgaatcccatcagccgcttggctcagattcaacaggccaaaaaggagaaagag
cccgagtacagcttagtgatagagagaggtctgccacggcgcagggagtttgtcatgcag
gtgagcgcgtgcggtcagaccgcagagggaatgggaccaagtaaaaaggtagccaagagg
aacgcagctgagaaaatgctggagctcctgggatttaaagtgcctcagcctcaacctccc
aaacccgcattgaaaacagacgagaagactcctgtgaaaaaacctggcgatggacgcaaa
gtgaccttctatgaacctagctgtgtagaggacgtggcgttgagtcccaaagaggaggac
taccgcctgccttacctgagccaccagcagctgcctgcagggatcttgcccatggtgccg
gaggtcgctcaagcggttggagcgtgccaagggccccatgctaaggactacagccgagcc
attcccaacccaggcaaagccaccatcactgccatgattgcaaacgagctgctgtacgca
ggggcgtctttgaccgcggagactatcctaaagaataaaaacaatcttaacaaactgccc
ctcggacccctcaccagaccctcagaacagctcggctatctcgcctcagtgcaaggtctc
caggtggaatacaaagattttcccaaaaacaacaagaacgagtttgtgtcactgataaac
tgctcctcgctgcctccactgatcagtcatgggattggaaaagatgttgaatcctgtcat
gatatggctgcactgaacattctgaagatgctctccgagttcgaccagcagtcgagtgaa
aaagtcggaaacgggccaacagcgggcagcgtgaagcagaaagtggacggcgagtcccac
atcaaaccggctaactcaagcacacagacgctggacggcaaggcttag
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