Oryzias melastigma (Indian medaka): 112150652
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Entry
112150652 CDS
T07439
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03030
DNA replication
oml03410
Base excision repair
oml03420
Nucleotide excision repair
oml03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
112150652 (lig1)
03410 Base excision repair
112150652 (lig1)
03420 Nucleotide excision repair
112150652 (lig1)
03430 Mismatch repair
112150652 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
oml03032
]
112150652 (lig1)
03400 DNA repair and recombination proteins [BR:
oml03400
]
112150652 (lig1)
Enzymes [BR:
oml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112150652 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
112150652 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
112150652 (lig1)
DNA replication proteins [BR:
oml03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
112150652 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
112150652 (lig1)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
112150652 (lig1)
NER (nucleotide excision repair)
Other NER factors
112150652 (lig1)
MMR (mismatch excision repair)
Other MMR factors
112150652 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
112150652
NCBI-ProteinID:
XP_024134862
Ensembl:
ENSOMEG00000023754
LinkDB
All DBs
Position
LG17:complement(31160053..31222928)
Genome browser
AA seq
971 aa
AA seq
DB search
MQRSIASFFQPKSKDKDIQKKANDDHLKKIAKSPLKVQNGVQEVDSPIKKTAKRSRQILD
SDEDEAPLVKEQAAPEEQGGKKAPGKTEKKTEVFKAVPTPLSPPPAPTTPSTPATPATPA
SSASPGTPSTSDSISPSGISKRKTARKMFPKRRLVEGRSEKAEGEAAEEETGQQNKRPRV
ESSASSAGNTDEPMEEEEAGGPGQPLENEKPAEEGETKQEEEQVEEKTAEEKQKTGDERG
PEKVTKDGKESPQSPTVEKKQKDAKEQKDKKAPISSFFAPRKAAVKTEKPERSDGEKKTK
KSSEEERKESKGDSTPSQTEYDPSRPNYHPVDHACWKHSQTVPYLAVARTFEKIEEDSGR
LRNIETLSNLFRSVLLLSPDDLLCCVYLCLNQLGPAYLGMELGVGETVLMKAVAQATGRQ
LDKIKAEAQEKGDLGLVAESSRSNQRMMFRPANLTVGSVFKKLKEIASMSGNSAMNKKID
IIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLSALSQAVCLTPPGQDFPPAVIDASK
GMSAESRRAWIEEKSLLLKQTYCEMPNYDIIIPVLLKEGIDQLPNHCKLTPGVPLRPMLA
HPTKGVGEVMKKFDEAAFTCEYKYDGERAQIHILESGEVRIFSRNQEDNTSKYPDIISRI
PKVKKESVVSCVLDSEAVAWDHEKKQIQPFQVLTTRKRKDVDASEIKVQVCVYAFDLLYL
NGESLVRQPLCRRRALLRESFTEVEGEFMFARSIDSDSTDAIAEFLEQSVRDSCEGLMVK
TLEKDATYEIAKRSHNWLKLKKDYLDGVGDTVDLCVIGAYLGKGKRTGTYGGFLLACYDE
ENEEFQSVCKIGTGFKDEDLEQHYKFLKEHILPKPRAYYRVDQSAEPDVWLDAVQVWEVK
CADLSLSPVYKAAMGLVDPEKGISLRFPRFLRIRDDKKPEDATSGSQIADLYKKQQQIQN
QGEKADPEDYY
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgaagcatcgcatcatttttccagcccaagagcaaagataaggacattcagaag
aaagctaacgacgaccacctgaaaaaaatagccaaaagccctctgaaggtgcagaatggc
gtgcaggaagtggactcccccatcaagaagactgccaaacgcagccgtcagatcctggac
agcgacgaagacgaggcgccgctcgtgaaggagcaagctgctcctgaggagcaaggagga
aagaaagctcctggtaaaacggagaagaagacagaagtgttcaaggcggttcccactcct
ctgtctccaccacctgctccaaccacaccctcaaccccagcgactccagctactcccgcc
tcctcggcttcaccgggaacgcccagcacttctgactccatctcaccgtcgggaatcagc
aaacgcaagacggcgaggaagatgtttcccaagaggaggctggtggagggcaggagtgag
aaggccgagggggaggcggcagaggaggagacgggtcagcagaacaaacggcctcgcgtg
gagagcagcgccagcagtgcagggaacacggatgaacccatggaggaagaagaggctggc
ggcccaggccagccgctggaaaatgagaagcctgcagaagaaggagagaccaaacaggag
gaggagcaggtagaggaaaagacagctgaagagaagcagaagacgggtgacgagcgaggg
cccgagaaggtcaccaaagatgggaaagagagcccgcaaagtccaacggtggaaaagaag
cagaaggacgcaaaggagcagaaagataagaaagctcccatcagcagtttctttgctccc
agaaaagcagcagtgaagacggagaaaccagagaggagcgacggagagaaaaagacgaag
aagagctccgaggaggagcgtaaagaaagcaaaggtgattccaccccgtcacaaactgaa
tatgacccttccaggccaaactaccatcctgtggaccatgcctgctggaagcacagccag
acagtgccgtacttggcagtggctcgcacctttgagaaaattgaagaggactctggcagg
ctgaggaacatcgagacgctgtcgaatctgtttcgctccgtgctgctgctctctccagac
gacctgttgtgctgcgtgtacctgtgcttgaaccagctgggcccagcctacctggggatg
gagctgggcgttggggagacggtgctgatgaaagcggtcgcccaagcaaccggacgccag
ttggacaaaatcaaagcagaggcccaggagaaaggagatttgggccttgtggctgaaagt
tcccgtagcaaccagcggatgatgttccggcctgccaacctgacagtggggagcgttttc
aagaaactgaaggaaattgcgagcatgagtggaaactcggccatgaataagaaaatcgac
atcatcaaaggcctctttgtggcgtgccgcttttcagaggcccgctacatcgtcaggtct
ctggccgggaagctgaggatcggcctcgccgagcagagcgtgctctctgctctgagccaa
gcggtctgcttgaccccacctggacaagatttccctcctgctgtgatcgatgcgagtaag
gggatgagcgctgagagcaggcgagcctggatcgaagagaagagtctccttctcaagcag
acgtactgcgagatgcccaattatgacatcatcatccccgttctgctaaaggagggcatt
gaccagctccccaaccactgcaagctgactccaggcgtcccgctgaggcccatgctggct
caccccactaaaggtgttggagaggtgatgaagaagtttgacgaggcggcgttcacctgc
gagtacaaatacgacggggagcgcgcacagattcacattctggagagcggcgaagttcga
atattcagccgtaatcaggaagacaacaccagcaaataccccgatatcatctctcgcatt
cccaaggtgaagaaggaatcagtggtgtcctgcgtcctggactcggaagctgtggcctgg
gaccacgagaagaaacagatccagcccttccaggtcctcaccactcgaaagagaaaggat
gtggatgcctcagagatcaaagtccaggtgtgcgtgtacgcctttgacctcctctacctc
aacggcgagtccctggtgcgacagcctttgtgtcggcggcgggctctgctgagggagagc
ttcacggaggtggagggggagtttatgtttgcccgctccatcgacagcgacagcaccgac
gccatcgccgagttcctagagcagtctgtccgagactcttgcgagggcctgatggtgaaa
actctggagaaggatgcgacctatgagattgccaagcgttcccataattggctcaagttg
aagaaggactacctagatggcgtgggcgacacggttgacttgtgtgtgatcggagcctat
ctggggaaagggaaaagaaccggcacctacggcggcttcctgttggcgtgctacgacgag
gaaaacgaggagttccagtcggtttgcaagatcgggacgggcttcaaggacgaagatctg
gagcagcattacaagtttttgaaggaacacatcctgcccaaacctcgggcttattaccgc
gtggaccaatcagcagagcccgacgtgtggctggacgccgtgcaggtgtgggaggtgaaa
tgtgccgacctctctctgtcgcccgtctacaaggccgccatgggactggtggatccggag
aaaggcatctctcttcggtttcctcgcttccttcggatcagagatgacaagaaacctgag
gacgccacctccggatctcagattgctgatttgtacaagaagcagcaacagattcagaat
caaggagagaaagctgacccggaggactattactga
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