Oryzias melastigma (Indian medaka): 112153745
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Entry
112153745 CDS
T07439
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03013
Nucleocytoplasmic transport
oml03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
112153745 (upf3b)
03015 mRNA surveillance pathway
112153745 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oml03019
]
112153745 (upf3b)
Messenger RNA biogenesis [BR:
oml03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
112153745 (upf3b)
mRNA cycle factors
P-body specific factors
112153745 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
112153745
NCBI-ProteinID:
XP_024139890
Ensembl:
ENSOMEG00000014736
LinkDB
All DBs
Position
LG10:5059569..5062681
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AA seq
457 aa
AA seq
DB search
MKEDKENTRPREKKVEIKCEDVEKTEKCKEKKETMTKIVIRRLPPTLTKEELEEQLQPLP
EVDYLEFFSNDTSLYPHLFARAYINFRNQDDVVLFRDRFDGYVFVDSKGQEFPAVVEFAP
FQKTAKKRTKKKDSKCGTIAEDPDYKRFLEYYNGDDNKLTTTPETLLEEVEARSKELSAK
KTTPLLDFLKNKQRLREERKEERRRRELERKRLREEERRKWREEERRKRKEAEKVKRLEK
PAEKDKDSVKEEPKIKLLKKQERSEDDDAEKPKDKPKRPEKGNKEDRPFGSFDQRRRQNM
DNKEDRGKKWDEDGRKEPRERDLDRDREREKERRLREKERLKRQDEERRKRRERQDGENS
FRKREEDFKKEKAFEKKKDETMVESAHSEKPEKPPKENRKEEMGKKERLRNKDRPAIQLY
QPGARSRNRFAPGGPESAPADKKTDIENKKPVEKGED
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaagacaaagaaaacacacggccgcgagagaaaaaggtggagataaaatgtgaa
gatgtggaaaagacagagaagtgcaaggaaaaaaaagaaaccatgacaaagattgtgatc
agacgattgccacccactctgactaaagaagagttagaggaacagttgcaacccctccca
gaggttgactatttggaatttttctccaatgacaccagcctttacccacacctctttgca
agagcttacattaacttcagaaaccaagacgacgttgtcctcttcagggatcgctttgat
ggctatgtctttgttgacagcaaaggtcaagaatttccagctgttgtggagtttgcacct
tttcaaaagactgccaagaaaaggactaaaaagaaggattcaaagtgtggtacaattgca
gaagatccagattacaaaaggttcctcgagtattacaatggagatgacaacaagttgaca
accacacctgaaactctcttagaagaggttgaagccagatctaaagaactttcagctaaa
aaaacaactcctctgctggacttcctgaaaaataaacaaagactcagagaggaaaggaaa
gaggagagaagaaggagagagcttgagcgcaagcgcctgcgtgaagaggagcgtcgcaaa
tggagggaggaggagaggaggaagcgcaaagaagcagagaaagtgaaaagacttgagaag
ccagcggagaaagacaaggattctgtcaaagaagaacccaaaataaagctgttgaagaag
caagaaagaagtgaggatgatgatgcagaaaagccaaaggataaacccaagagaccagag
aaggggaataaagaggacaggccctttggaagttttgatcagaggaggcgccagaacatg
gataacaaggaggatcgtgggaagaagtgggatgaggatggacggaaggagccccgagag
cgggacctggatcgagacagagagcgggaaaaagagcggcggctcagagaaaaggagcgt
cttaaacgacaggacgaggaacgacgaaaacggagggaaaggcaggacggagagaactcc
ttccggaagcgtgaagaggactttaaaaaagaaaaagcttttgagaaaaagaaggatgag
accatggtggaatctgctcactccgagaagccagaaaaaccccctaaagaaaacagaaag
gaggaaatggggaaaaaagagcgactacggaacaaggatcggcctgccattcagctgtac
caaccaggagccaggagccgcaatcgctttgcacccggaggacctgaatccgcacctgca
gacaaaaaaactgatatcgagaacaagaaaccggttgagaaaggagaagactga
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