Oryzias melastigma (Indian medaka): 112157555
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Entry
112157555 CDS
T07439
Symbol
rbfox2
Name
(RefSeq) RNA binding protein fox-1 homolog 2 isoform X2
KO
K14946
RNA binding protein fox-1
Organism
oml
Oryzias melastigma (Indian medaka)
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
oml03041
]
112157555 (rbfox2)
Spliceosome [BR:
oml03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
112157555 (rbfox2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fox-1_C
RRM_1
RRM_5
RRM_8
Calcipressin
Motif
Other DBs
NCBI-GeneID:
112157555
NCBI-ProteinID:
XP_024146127
Ensembl:
ENSOMEG00000015966
LinkDB
All DBs
Position
LG1:complement(22136908..22186541)
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AA seq
456 aa
AA seq
DB search
MLMSTDVASIMLPVSRALIDRDRELDTMPGVHPNPGGAPAVVRGMKRGDPEPDAQTAVAL
VDSSGAECKRPRIDGSGGLGEVGQNNDPLTLGYHGYPTHSQGSQDSAGGQEGLVPPPFSA
FPPPPPPPPQNGLTLDYGGSLYATGAVQGPVEAGGAGNGVVNPANSLSAQSDGSSQIDGQ
SGVGSGGGGGGGGSGDDSDAKGTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE
RGSKGFGFVTFESSADAERAREKLHGTLVEGRKIEVNNATARVMTNKKMTTPYSNGEGLA
ALPYAGWKLSPMVGAMYSPELYTVPGFPYPAAAAAAASTAATFRGAHLRGRARPVYSAVR
AAVPQPAIPTYPGVMAYQEGFYGAADLYGGYAAYRYAQPAAVATPAAAAAAAAAYSDSYG
RVYTADPYHAALAPAAYGVGAMATLYRGGYSRFAPY
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgttaatgtcgaccgacgttgcttccattatgctgcccgtgtcccgggctctcatagac
cgggacagagagctggacaccatgcccggggtgcatcccaacccgggcggcgctcccgca
gtcgtccggggcatgaagcgcggggacccggagcccgacgcgcagacggcggtcgcgctg
gtggactccagcggagcagagtgcaagcgcccacgcatcgacggctcgggagggctcggc
gaggtcggccagaataacgacccattgactctcggttaccacggttacccaactcacagt
cagggctctcaggatagtgctggcggtcaggagggactggtacctccacctttctccgcg
ttcccacctcccccaccaccaccaccgcagaacggcctgaccttggactacgggggcagt
ctctacgcgacgggggccgttcagggccccgtggaggccggcggagcgggaaacggcgtg
gtcaaccctgccaacagcctcagcgctcaatcagatgggtcctctcagattgacggccag
tctggagtcggttcgggaggagggggtgggggcgggggctccggggacgattctgacgcc
aaggggacccccaaacgcctccacgtctccaacatccccttccgcttccgtgaccccgac
ctacggcagatgtttgggcaatttggcaaaatccttgacgtggagatcatttttaacgag
agaggctccaagggcttcggttttgtaacgttcgagtcgagcgcagatgcggagagagcc
agagagaagctccacggtaccctggtggaggggcgtaaaatcgaggtcaataacgctaca
gccagagtgatgacaaacaagaagatgaccacaccgtactctaatggagagggccttgca
gcactaccatacgctggttggaagttaagtccaatggttggagccatgtacagtcctgaa
ctttatacagtaccgggattcccgtacccagcagcggcagcagccgctgcctccaccgct
gcaacgtttcgaggcgctcacctgcgggggcgtgcccgacccgtctacagtgccgtcaga
gcggccgtcccccagcccgccatccctacatatccaggcgtgatggcgtatcaggagggt
ttttacggtgccgctgacctctatggcggctatgcagcgtatcgctacgcccagcctgct
gctgtagcaactccggcagccgcggccgcagcagctgcagcgtacagtgacagctatgga
cgagtttacacggcagacccataccatgctgctctcgcgccagctgcctatggggttgga
gccatggctacgctctacagggggggctacagtagatttgccccttactaa
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