Oryzias melastigma (Indian medaka): 112160053
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Entry
112160053 CDS
T07439
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
112160053 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
oml03400
]
112160053 (lig4)
Enzymes [BR:
oml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
112160053 (lig4)
DNA repair and recombination proteins [BR:
oml03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
112160053 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
BRCT
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
112160053
NCBI-ProteinID:
XP_024150156
Ensembl:
ENSOMEG00000003459
LinkDB
All DBs
Position
LG2:complement(9042360..9046030)
Genome browser
AA seq
910 aa
AA seq
DB search
MDAASSKSDAPGEHTVAAQVPFIHLCTTLEKIQKAKLRPEKSKILGDFIESWRKFHAALH
KDNPQTADSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKSGPEANKLLNYRA
PTTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVALNNASKKKDLMRKSLLHL
ITQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELFNVNTDLNKVCQQLHDPSVS
LSDVSIGLFSAFKPMLAAVANICNVEKQMGNSPFYIETKLDGERIQLHKDGDVYKYFSRN
AFEYTQQFGGSPLEGSLTPYVHNVFKSHVVSCILDGEMMAYNPATETFMQKGSRFDIKKL
MDDSELQTCFCVFDVLLVNDRKLGKEALKKRYEILQTVFTPAKGRIHLVPKSEARTVQDV
VSALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLCAVAEAPKPGEKPSVFHSLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PPSILCGTEKPEVYIEPCNSIIIQVKAAEIVPSDMYRTNCTLRFPRIEKIRDDKEWHQCM
TLAELDQFRGKASGKLASRHLRIDDNDQPQKKKRKLPPKAKRVVGVLDHFKPQDLTGVSK
ETDMFEDVEFCILNGTDDHPKCELEKGVARCGGIVVQNPGRDTYCIIAGAENMRVKNLIS
SDQHDVVWASWLLECLEQKEVVPWLPRHMIHMSPTTREHFAKEYDSYGDSYFLDTDEQQL
REVFGRIGDVEANVDVAQVEERYGFSDLPTSMFRPFTAYADMFADIGEPETLIPATSLKI
RALEFRFHGGKVVEGLEEGVSHVLIEDQTRLLDLRTLRRCFRRKFKIVKHTWVTDSIKAG
GLLDDREYLV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgcgtcctccaaaagcgacgctcccggagagcatacggtggcggcgcaagtt
cccttcattcatctctgcacgaccttagagaagatccaaaaggccaaactgcgtccagag
aaatccaagatcctgggggatttcatcgagtcctggcgaaagttccacgccgccctgcac
aaagacaacccccaaaccgcggactccttctatccagccatgcggctcatcgtcccgccg
ttcgagcgcgagcggatggcgtacggcatcaaggagagcatgctggcgaagctttacatc
gacgtgttaggcctgccgaagagcgggccggaggccaacaagctgctgaactaccgcgct
ccgacgacgtcccagggagaggccggagacttcgccgggatggcgtacttcgtcctgaaa
aaacggtgcaccagccaggggaacctcagcatcaaagaggtcaacgacttcctggactcg
gtggcgttgaacaacgccagcaagaagaaggatctgatgaggaagagcttgctccacctc
atcacccagagctccgccctggagcagaagtggctcatccggatgatcctgaaggacatg
aagctcggcgtcagcaaggagaccgtgctgcaggtcttccacccggacgccgccgagctc
ttcaacgtcaacacagacctgaacaaggtgtgccagcagctccacgacccctccgtgtct
ttgagcgatgtctccatcgggcttttctccgcttttaagcccatgctagcggcggtggct
aacatctgcaacgtggagaagcagatgggcaacagccccttttacatcgagaccaagctg
gacggcgagcgaatccagctccacaaggacggagacgtctacaagtacttcagccgaaac
gcctttgagtacacgcagcagtttgggggatcgccgctggagggatcgctgacgccgtac
gtccacaacgtcttcaaaagccacgtggtgagctgcatcctggacggcgagatgatggcg
tacaacccggccacggagaccttcatgcagaaggggagcaggttcgacatcaagaagctg
atggacgactcggagctgcagacgtgcttctgcgtgttcgacgtgctgctggtcaacgac
cgcaagctcggcaaggaggcgctgaagaagcgctacgagatcctccagacggttttcacc
cccgccaaggggcggattcacctggttccgaagagcgaagccagaaccgtgcaggacgtg
gtgagcgcgctcaatgacgccatcgacagcagggaggaggggatcatggtgaaggacccg
ctgtccatctacaagccggacaagcgcggcgaaggctggctgaagataaagcccgagtac
gtggacggcttgatggacgagctggacctgctgatcgtcggcggttactgggggaaaggc
cggcggggaggtatgatgtcacacttcctgtgtgctgtcgccgaagctccaaagccgggc
gagaagccgtcagtcttccactccctgtgccgcatcggatcgggctacaccatgaaggag
ctgtacgacctcggcctcaagctggccaagcactggaaggtctaccggaagaacgacccg
ccgccgtccatcctgtgcggcaccgagaaaccggaagtctacatcgagccctgcaactcc
atcatcatccaggtgaaggcggcagagatcgtccccagcgacatgtacagaaccaactgc
accctgcgcttcccccggatcgagaagatccgggacgacaaggagtggcaccagtgcatg
accctggccgagctggaccagttccgcggcaaggcgtccgggaagctggcctcgcgccac
ctccgcatcgacgacaacgaccagccgcaaaagaagaagcgcaagctgccacccaaagcc
aagagagtggtcggcgtcctcgaccacttcaagccccaagatctgaccggcgtctccaag
gagacggatatgttcgaggacgtagagttctgcatcctcaacggcacggacgaccacccc
aaatgtgagctggagaagggcgttgccaggtgtggcgggattgtggttcaaaaccccgga
cgggacacctactgcattatagccggcgcggagaacatgcgcgtgaagaacctgatctcc
tcagaccagcacgatgtggtttgggcctcctggttgctggagtgtctggagcagaaggag
gtggtgccgtggctgcctcgccacatgatccacatgtcccccaccaccagggagcacttc
gccaaggagtacgacagctacggcgacagctacttcctggacacggacgagcagcagctg
cgggaggttttcgggcgtatcggcgacgtggaggcgaacgtcgatgtggcgcaggtggag
gagcgctacggctttagcgaccttccgacaagcatgttcagacccttcacggcgtatgcg
gacatgtttgctgatattggagaacctgaaacgctcatacctgcgacctctctgaagatc
agagcgctggagtttcgcttccacggaggaaaggtggtggaggggctggaggaaggagtt
tcacacgttctcatcgaggaccagaccagacttctagacctgaggactctgaggcgctgc
ttcaggaggaagttcaagatcgtcaaacacacgtgggtgaccgactccattaaagctggt
ggactgctggatgacagagaatacttggtttga
DBGET
integrated database retrieval system