KEGG   Oryzias melastigma (Indian medaka): 112160053
Entry
112160053         CDS       T07439                                 
Symbol
lig4
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
oml  Oryzias melastigma (Indian medaka)
Pathway
oml03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:oml00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    112160053 (lig4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:oml03400]
    112160053 (lig4)
Enzymes [BR:oml01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     112160053 (lig4)
DNA repair and recombination proteins [BR:oml03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     112160053 (lig4)
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV BRCT_2 DNA_ligase_A_C BRCT RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 112160053
NCBI-ProteinID: XP_024150156
Ensembl: ENSOMEG00000003459
LinkDB
Position
LG2:complement(9042360..9046030)
AA seq 910 aa
MDAASSKSDAPGEHTVAAQVPFIHLCTTLEKIQKAKLRPEKSKILGDFIESWRKFHAALH
KDNPQTADSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKSGPEANKLLNYRA
PTTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVALNNASKKKDLMRKSLLHL
ITQSSALEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELFNVNTDLNKVCQQLHDPSVS
LSDVSIGLFSAFKPMLAAVANICNVEKQMGNSPFYIETKLDGERIQLHKDGDVYKYFSRN
AFEYTQQFGGSPLEGSLTPYVHNVFKSHVVSCILDGEMMAYNPATETFMQKGSRFDIKKL
MDDSELQTCFCVFDVLLVNDRKLGKEALKKRYEILQTVFTPAKGRIHLVPKSEARTVQDV
VSALNDAIDSREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLCAVAEAPKPGEKPSVFHSLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PPSILCGTEKPEVYIEPCNSIIIQVKAAEIVPSDMYRTNCTLRFPRIEKIRDDKEWHQCM
TLAELDQFRGKASGKLASRHLRIDDNDQPQKKKRKLPPKAKRVVGVLDHFKPQDLTGVSK
ETDMFEDVEFCILNGTDDHPKCELEKGVARCGGIVVQNPGRDTYCIIAGAENMRVKNLIS
SDQHDVVWASWLLECLEQKEVVPWLPRHMIHMSPTTREHFAKEYDSYGDSYFLDTDEQQL
REVFGRIGDVEANVDVAQVEERYGFSDLPTSMFRPFTAYADMFADIGEPETLIPATSLKI
RALEFRFHGGKVVEGLEEGVSHVLIEDQTRLLDLRTLRRCFRRKFKIVKHTWVTDSIKAG
GLLDDREYLV
NT seq 2733 nt   +upstreamnt  +downstreamnt
atggacgccgcgtcctccaaaagcgacgctcccggagagcatacggtggcggcgcaagtt
cccttcattcatctctgcacgaccttagagaagatccaaaaggccaaactgcgtccagag
aaatccaagatcctgggggatttcatcgagtcctggcgaaagttccacgccgccctgcac
aaagacaacccccaaaccgcggactccttctatccagccatgcggctcatcgtcccgccg
ttcgagcgcgagcggatggcgtacggcatcaaggagagcatgctggcgaagctttacatc
gacgtgttaggcctgccgaagagcgggccggaggccaacaagctgctgaactaccgcgct
ccgacgacgtcccagggagaggccggagacttcgccgggatggcgtacttcgtcctgaaa
aaacggtgcaccagccaggggaacctcagcatcaaagaggtcaacgacttcctggactcg
gtggcgttgaacaacgccagcaagaagaaggatctgatgaggaagagcttgctccacctc
atcacccagagctccgccctggagcagaagtggctcatccggatgatcctgaaggacatg
aagctcggcgtcagcaaggagaccgtgctgcaggtcttccacccggacgccgccgagctc
ttcaacgtcaacacagacctgaacaaggtgtgccagcagctccacgacccctccgtgtct
ttgagcgatgtctccatcgggcttttctccgcttttaagcccatgctagcggcggtggct
aacatctgcaacgtggagaagcagatgggcaacagccccttttacatcgagaccaagctg
gacggcgagcgaatccagctccacaaggacggagacgtctacaagtacttcagccgaaac
gcctttgagtacacgcagcagtttgggggatcgccgctggagggatcgctgacgccgtac
gtccacaacgtcttcaaaagccacgtggtgagctgcatcctggacggcgagatgatggcg
tacaacccggccacggagaccttcatgcagaaggggagcaggttcgacatcaagaagctg
atggacgactcggagctgcagacgtgcttctgcgtgttcgacgtgctgctggtcaacgac
cgcaagctcggcaaggaggcgctgaagaagcgctacgagatcctccagacggttttcacc
cccgccaaggggcggattcacctggttccgaagagcgaagccagaaccgtgcaggacgtg
gtgagcgcgctcaatgacgccatcgacagcagggaggaggggatcatggtgaaggacccg
ctgtccatctacaagccggacaagcgcggcgaaggctggctgaagataaagcccgagtac
gtggacggcttgatggacgagctggacctgctgatcgtcggcggttactgggggaaaggc
cggcggggaggtatgatgtcacacttcctgtgtgctgtcgccgaagctccaaagccgggc
gagaagccgtcagtcttccactccctgtgccgcatcggatcgggctacaccatgaaggag
ctgtacgacctcggcctcaagctggccaagcactggaaggtctaccggaagaacgacccg
ccgccgtccatcctgtgcggcaccgagaaaccggaagtctacatcgagccctgcaactcc
atcatcatccaggtgaaggcggcagagatcgtccccagcgacatgtacagaaccaactgc
accctgcgcttcccccggatcgagaagatccgggacgacaaggagtggcaccagtgcatg
accctggccgagctggaccagttccgcggcaaggcgtccgggaagctggcctcgcgccac
ctccgcatcgacgacaacgaccagccgcaaaagaagaagcgcaagctgccacccaaagcc
aagagagtggtcggcgtcctcgaccacttcaagccccaagatctgaccggcgtctccaag
gagacggatatgttcgaggacgtagagttctgcatcctcaacggcacggacgaccacccc
aaatgtgagctggagaagggcgttgccaggtgtggcgggattgtggttcaaaaccccgga
cgggacacctactgcattatagccggcgcggagaacatgcgcgtgaagaacctgatctcc
tcagaccagcacgatgtggtttgggcctcctggttgctggagtgtctggagcagaaggag
gtggtgccgtggctgcctcgccacatgatccacatgtcccccaccaccagggagcacttc
gccaaggagtacgacagctacggcgacagctacttcctggacacggacgagcagcagctg
cgggaggttttcgggcgtatcggcgacgtggaggcgaacgtcgatgtggcgcaggtggag
gagcgctacggctttagcgaccttccgacaagcatgttcagacccttcacggcgtatgcg
gacatgtttgctgatattggagaacctgaaacgctcatacctgcgacctctctgaagatc
agagcgctggagtttcgcttccacggaggaaaggtggtggaggggctggaggaaggagtt
tcacacgttctcatcgaggaccagaccagacttctagacctgaggactctgaggcgctgc
ttcaggaggaagttcaagatcgtcaaacacacgtgggtgaccgactccattaaagctggt
ggactgctggatgacagagaatacttggtttga

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