Oryzias melastigma (Indian medaka): 112163023
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Entry
112163023 CDS
T07439
Symbol
trim32
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM32 isoform X2
KO
K10607
tripartite motif-containing protein 32 [EC:
2.3.2.27
]
Organism
oml
Oryzias melastigma (Indian medaka)
Pathway
oml04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
oml00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112163023 (trim32)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
oml04121
]
112163023 (trim32)
Enzymes [BR:
oml01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112163023 (trim32)
Ubiquitin system [BR:
oml04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
112163023 (trim32)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_UBOX
zf-RING_5
zf-C3HC4
zf-RING_2
zf-C3HC4_2
Baculo_IE-1
zf-RING_4
GIY_YIG_2
zf-C3HC4_4
zf-RING_11
Haem_bd
STAT_alpha
DUF2203
ERM_helical
Motif
Other DBs
NCBI-GeneID:
112163023
NCBI-ProteinID:
XP_024154877
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All DBs
Position
LG12:complement(11491616..11497969)
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AA seq
682 aa
AA seq
DB search
MAAAPSPLDPDLLREVLECPICLETYNQEQLRPKLLQCGHTVCRLCLEKLLANTINGVRC
PFCSKVSRMSSISQLADNITVLKIIDCTVSCSAAAAALMCKSCCSRLPRQYCHDCAVVLC
ELCKGEGHLHQGHSVQTIRLAAEQRRKELGGRLAALRDVMGEIQKKKRAIESISKSLKLK
YRTVQQEYATAEQSIQEEMSRSRMTFTASMGEVEKINAQVLEEQAYLLNIAEVKVVSRCD
FLTMQVRQSDTALLKDDGPGSDDEELDLRSSLPTQFQLQEPGLVRVEHSKPLEVGHVTTN
TYTVNTDDQGGLEVAHDGDLDGVVATLGATGGAVGFSMDLYRDMDMVTGVEEAGCDSPSS
FKSKSMDAGGGSPAGASAGPPVCQFVKKMGCKGTLPGMFNLPVGICVTGQGEVLVADRGN
FRVQIFNRKGFQREIRRNASSIDNFVLSFLGADLPNLVPLSIAVTPQGLIGVTDNYDNSV
KVYTMDGHCIACHKNQLIKPWGITAMPSGQFVVSDVEGGKLWCLAVDRNVGVVSYNRLCS
AVRPKFVTCDAAGTVYFTQGLALNFEKRQNEPHLEGGFSIGSVGTDGQLGKQLSHFFSEA
EDFRCITGMCVDANGDLLVTDSGRKEILQFPKEGGFNVLIQDGLTCPVGVATTHKGQLLV
LDCWDHCVKVFTYIQRRHSSTS
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcaccttcccctctggacccagacctattgagagaagttctggaatgcccc
atttgcctggagacgtacaaccaggaacagctgcgacccaaactcttacagtgtggccac
acagtatgtcgactgtgcctggagaaacttttggcaaacaccatcaacggcgtgcgctgc
cccttctgcagcaaggtgtcccgtatgagcagcatctcccagctggctgataatatcact
gtgctcaagattatagattgcaccgtgtcctgcagcgcagccgccgctgcactgatgtgt
aagtcctgctgtagccgtctaccgagacagtattgccacgattgtgccgtggttctttgt
gagctgtgtaaaggtgagggccacctgcaccaaggccactctgtccagacgataagactc
gctgccgagcagcgccgtaaagaactgggaggcaggctggccgctctccgtgacgtcatg
ggagagattcagaagaaaaagagagcaatagaaagcatttccaagtcactgaagctgaag
taccggacagttcagcaggaatacgctacggcggagcaatccattcaagaggaaatgagt
cgatctcgaatgacgttcacagcctcaatgggggaggtggaaaagattaacgcacaggtc
ttggaggagcaggcgtacctcctcaacatcgcggaggtaaaggtcgtgtcacgctgtgat
tttcttaccatgcaggtcaggcagagtgatacggctctattaaaagacgacggccccggc
agcgatgatgaggagctggatctgaggagcagtttgccgacacagttccagctgcaagag
ccaggtctggtccgagtggagcactccaaacctttagaagtgggtcacgtgaccacaaac
acttacacggtcaatacagatgatcaggggggtttagaggtcgcacatgacggggatttg
gacggagtagtcgccacgcttggagccaccgggggtgctgtggggttttcgatggatctt
tacagagacatggacatggtgacaggtgtggaggaggcaggatgcgactctcccagcagc
tttaaatccaagtccatggatgcaggaggaggatcgccggccggggccagtgcaggccct
cccgtttgtcagtttgtgaaaaagatgggctgtaaggggactctgcccggcatgttcaat
ttaccggtcggcatctgcgtgacaggacaaggtgaggtgctggtggccgaccgtggcaac
ttccgcgtccagatttttaaccgcaaaggtttccagcgtgaaatccgacgcaacgccagc
agcattgacaacttcgtcctgagtttcctcggggccgacctgcctaacttggtccctcta
tcaatcgctgtgaccccacaaggcctgattggcgtcaccgacaattacgacaactccgtc
aaagtctacaccatggatggacactgcattgcttgccacaagaaccagttgataaaaccc
tgggggataaccgccatgccatcgggccagttcgtagtgtcagacgtggagggcggcaaa
ttatggtgtctagcggtggaccgcaacgtgggcgtggtcagctacaacagactgtgctct
gctgtccgccctaagtttgtcacatgtgatgcggcaggaacagtttattttactcagggc
ctggctctgaacttcgagaagcgacagaatgagccccacctggaggggggcttctctatc
ggctcggtcgggacggacggccagctcggcaaacagctcagccacttcttctccgaggcc
gaggactttcggtgcatcactggaatgtgcgtggacgctaacggggacctgcttgttaca
gacagcgggcgaaaagaaatcctgcagtttcctaaagaaggcggcttcaacgttctcatc
caggacgggctgacctgccctgtgggcgtggccaccacccacaagggacagttgctcgtc
ttggattgttgggaccactgtgtcaaagtctttacctacattcaaagaaggcattcttcc
acttcgtaa
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