Oncorhynchus mykiss (rainbow trout): 110490094
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Entry
110490094 CDS
T07259
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110490094 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
omy03021
]
110490094 (pcf11)
03019 Messenger RNA biogenesis [BR:
omy03019
]
110490094 (pcf11)
Transcription machinery [BR:
omy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110490094 (pcf11)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110490094 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
110490094
NCBI-ProteinID:
XP_021418927
Ensembl:
ENSOMYG00000047084
LinkDB
All DBs
Position
15:complement(42646969..42677696)
Genome browser
AA seq
1695 aa
AA seq
DB search
MDCLVINGYVSDKIGLVFDRSHIAKMDDAAREDACREYQSSLEDLTFNSKPHINMLTILA
EENLHFAKDIVAIIEAQITKAPAAEKLPVLYLVDSIVKNVGGEYLAVFAKNLVTSFICVF
EKVDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSHDPAWPIKALPPTVNASIHVNPKF
LKHPEEVTSPRALSPAPLVRAPAPAPQPAVVPSVSEKSITQEQVIRQQLLAKQKQLLELQ
QKKIELELEQTKAQLSCPSFTFQAANVVLSTPAIVPKSTLPPSVIKPCLPPVSDPKPPTR
DPRLNRAGPGALQAKESTSHKKEGHGMGGPAHTPEKQLPERPGRPERTRPPKKELLEVKT
KSKSLSPMAKGVLGKSKHYEAENVKTTADATGKKDPRLRKHLHDKADPKEEGKEKKKCTD
KEKEMDDALMKASGRGKMANGSVSKPEREKPEPVEKPENQIRGNARTNARKRSRSPSLHL
HSPKRKTERRSPKRRARSISPSPPLHKPGKGGRQSGGKHSSHHEDPQHGTTREERVTPKK
SSSEPRRTKRPAEERPVEARDTHSSPRTTSEGKETKENAKRWRSGWEENKHLKLSSEEAH
GKGAGPPQRRPSYSSSKRPTTPKQHRLSVDANLQIPEVLHSASKRDLLKKASKHLENGEI
SHDDFLNVAHQIKQLFQYQEEKQRGGDSWEGSSEDGHGHAHPHHLPPTRKKPLLATPTGG
VSSGADLSDAELTYYEHKSKLRRTQVMLWQQEQGGEGWDGEDSQEEVEGVLGRPGEGPGG
AKTEVNRETNALPSGMKFTRLPKDRLKEVEEEQPTPAAIIQEYSHGNEFPRLKSLPGLRF
RRIQDPRESTATDRLKAGERERNSPLSERLPNHRPPYDEREEPKSGYNAPPRRYGGGPLS
EDHAVKPPYPRYDDPRKHDRVPPKPPSGPVLQNSVSLALDGPIRKSPVPLPVPAYERERL
SPLQQMDAAEMSPVPRFESPNSEHSCDEGPLDTPPLPRPHHPGGPPRGPVLSSVRSKHVE
SPGHTPPHAADGPQRYDGGPKGGPPSPRYDGPHKGTQYDGPGHIGQPGRPHPGGRYEGVQ
GPGRYDGPGCSSHGPSRYDGPYPQGPGRFDGPALHKGPEKFDGPGRYDGPSMPHVPMRGD
PQGIGGRFDGGPPPPQQGRLSGRYDGRFDGQGPGPMRFDGPMQSNRFDGPMNFNSSHMQP
GPGRFEGLMRFQQGPMRFDGAPNQPGPMRFDGPGNPSTPMGQPGPMRYDPLPSLPPQGMP
PRFDCPSGQQVSPRYHTTPNLQPPLRPLGTPMYDPVNPGGPQQFQTFSVQQNVVGQQGAN
FTVSPVPVSQAGFNNSYVRPPFYTPGVPLPPAGNMQQPMNMLSNLGQPFIPPSTVPFNQP
APQFPPPESHFGQVDVNDLLSKLISTGIISTGGIKPAQSTDTAAAHSGTESAATQPTPPM
VEEEEEEEQEEDENVPDLTGFVIEDMKQRYDSVVTKLYTGIQCYSCGMRFTASQTDVYAD
HLDWHYRLNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSLFFEKVNEEVVQKT
QEAAKEKEFQSVKAAADVVDETCEICQEQFEMYWEEEEEEWHLRDAIRVDEKTYHPSCFE
DYNNTSSFLDVTPSPIKLMENPLGAFIKRESDEVTSCCAAVKQEVESSLSETGGEAQNVK
DEVQVKMEGETSAIS
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctcgtaataaatggttatgtttctgataagattggtttagtatttgatcga
tcacacatcgcaaagatggacgacgcggcgagggaagatgcctgccgagagtatcagtcc
tccctcgaagatttgacattcaacagtaaacctcacatcaacatgctgaccattctggca
gaggagaatctgcacttcgccaaggatatcgtcgcaataattgaagcacaaatcaccaag
gctccagctgccgagaagcttccagttttgtacttagtggattccatagtgaagaatgtt
ggaggcgaataccttgcagtgtttgctaaaaacctagtcacttcatttatatgtgttttt
gaaaaggtggatgagaacactaggaaaagtctgttcaaattacgctccacctgggatgag
atcttcccactgaagaaactctacgctctggacgtgagagtcaactctcacgacccggcc
tggcccatcaaagcactgccccctactgtgaacgccagcattcatgtcaaccctaagttt
ttaaaacatcctgaggaggtgacctcccctagggccctgtcccctgcacccctagtccgt
gccccagcccctgctccccagcctgcagtggtccccagcgtcagtgagaagagcatcacc
caggagcaggtgataaggcagcagctgctggccaagcagaaacagctactggagctacag
cagaagaagattgagcttgagctggagcagaccaaggcacaactgtcctgcccctctttt
acatttcaggctgcaaacgtggtactgtcaactccagcaatagtgccaaagtccaccctg
cctccctctgtcatcaaaccctgtctcccccctgtctccgaccccaaaccccccaccagg
gacccccgcctcaaccgggccggcccaggggccctccaggccaaagaatcaaccagccat
aagaaagaaggccatggtatgggaggaccagcacacacaccagagaaacaactgccagag
cgacccggcaggcccgagaggacacggccccccaagaaagaacttctagaagtgaaaacc
aagtccaagtccctctctcccatggctaaaggggtgcttgggaagagcaagcactatgag
gctgagaacgtgaagacgacagcggatgccacgggcaagaaagaccccaggctgaggaaa
catctccatgacaaggctgacccaaaagaagaggggaaagagaagaagaaatgcactgat
aaggagaaagagatggatgatgcattgatgaaggcatcaggcagggggaagatggccaac
ggctcagtcagcaaaccggagcgtgagaaaccggagcctgtagagaaaccggagaaccag
atcagaggaaatgccaggaccaacgccaggaaacgctcccgctccccctctctgcacctg
cactcacctaagagaaagactgagaggaggtcccccaagaggagagccaggagcatctcc
ccctctcctcctttacacaaacctgggaaaggagggaggcagtcaggaggcaagcactcc
tctcaccatgaggacccccagcacgggaccaccagagaggagagggtaacccccaagaag
agctcgtctgagcccagaagaaccaagaggccggctgaggagaggccggtggaggccagg
gacacgcattcctccccccgcactacctcagagggcaaggagaccaaggagaatgccaag
cgctggaggagtggctgggaagagaacaaacatctgaagttgtcgtcagaggaggctcat
gggaagggggcaggtcctccacagagacggccgtcatactccagcagcaagagacctacc
acccccaaacagcatcgccttagtgtcgatgcaaacctgcaaatcccagaggtgcttcac
tctgccagcaagagagacctgctcaaaaaggccagtaagcatctggagaacggagagatc
agccatgatgacttcctgaatgtggctcaccagatcaagcagctgttccagtaccaggaa
gagaagcagcgaggaggagactcctgggagggctccagtgaggatggtcacggacacgcc
cacccacaccacctcccaccaaccaggaagaagcccctgctggccacacccacaggggga
gtgtcctccggggcggacttgtccgacgcagagctcacctactatgaacacaagtccaag
ctgaggaggacccaggtgatgctgtggcagcaggagcaaggaggggagggctgggacgga
gaggacagccaggaggaggtagagggggtgctggggaggcccggggagggccctgggggt
gccaagactgaggttaacagggagactaacgcccttccttcagggatgaagttcaccagg
cttcctaaggacaggctgaaggaggtagaggaggagcagcccaccccagcagccatcatc
caggagtacagccacgggaacgagttccccaggctcaagtctctgccagggctacgcttc
aggaggatacaagaccccagggagtccaccgccactgacagactcaaagctggtgaaaga
gagcgaaactcccccctcagtgagcggctgcccaatcacagaccaccgtacgatgagagg
gaggagcctaagagcggctacaatgcccctcccaggcggtacggaggaggtccgctgtct
gaagaccatgctgtcaaacctccgtacccccgttacgatgaccctcgcaaacacgaccgc
gtcccccccaaaccccccagcggcccggtgctccagaactcagtcagcctggcactggac
ggccccattaggaagtccccggttcctttaccggtaccagcatacgagcgggagcgcctg
tccccgttacagcagatggacgcggcagagatgagccctgtcccgcgctttgagagcccc
aacagcgagcactcgtgtgacgaagggcccctggacaccccccctctacccagaccccac
cacccaggaggacccccccgtgggcccgtgctctcctcagtacgcagcaaacacgttgag
tctccaggacacacccctcctcacgccgcagatggcccccagagatacgacggtggtcct
aaaggaggaccaccttcgccacgctatgacggaccccacaagggcactcagtacgacggg
cctggtcacataggtcagcctggcaggcctcaccctgggggccgttacgagggcgtccag
gggcccggtaggtacgatggaccagggtgctcctcacacggcccatcaaggtatgatggg
ccctaccctcagggccccggcaggtttgacggccccgctcttcataaaggaccagagaag
tttgacggaccaggaagatacgacggcccctccatgcctcacgttccaatgagaggggac
ccacaaggcattgggggaaggtttgacggcggcccaccgcctccgcagcaaggtaggcta
tcggggcgatatgacggtagatttgacggacaggggcctgggccaatgcgttttgacggc
cccatgcagtccaaccgcttcgatggtccaatgaacttcaacagctcccacatgcagccc
ggccctggaaggttcgaaggactaatgaggttccagcaaggccccatgagattcgacggc
gctcccaaccagccaggcccgatgcgtttcgatggcccagggaacccctccaccccaatg
ggccagcccggccccatgcgctacgaccccctgccctctctgcccccccagggcatgccc
ccacgctttgactgcccctccggccagcaggtgtctcccaggtaccacaccactcccaac
ctgcagcccccgctgcggccactagggacacccatgtacgacccagtcaaccccggaggc
ccccagcagttccagacgttctcagtgcaacagaacgtggtgggccaacagggggctaac
ttcacggtgtctcccgtccctgtgtcccaggctgggttcaacaactcctacgtcagacct
ccgttctacacccctggtgtgcctctgccaccggcagggaacatgcagcagccgatgaat
atgctttctaaccttggccagcccttcatccctcccagcacagtgcctttcaaccagcct
gctccccagtttcctcctccagagagtcactttgggcaggtagatgtaaacgacctgctg
tccaagctcatttccaccggcatcatctctaccggaggcatcaaaccagctcagagtaca
gacactgctgcagcacacagcggtacagagtcagccgccacccaaccgacccctcccatg
gtagaagaggaggaagaggaagagcaggaggaggatgagaatgtcccagacctcaccggc
ttcgtcatcgaagacatgaaacagcgctatgacagcgtggtgactaagctgtacacaggg
atccagtgttactcctgcggcatgcgtttcaccgcctctcagacagacgtctacgctgac
cacctggactggcactaccggctgaaccgttccgagaaagacatcagcaagaaggtcacc
caccgccgctggtactacagcctcacggactggatagagtttgaggagatagcggacctg
gaggagcgggccaagagcctgttctttgagaaggttaatgaggaggtagtgcagaagacc
caggaggccgccaaggagaaggagttccagagtgttaaagcagctgcagatgtggtggat
gagacgtgtgagatctgccaggagcagtttgagatgtactgggaggaggaggaagaggag
tggcacctgagagatgccatcagagttgacgagaagacatatcatccttcatgttttgaa
gattacaacaatacatcttcgttcctggacgtcaccccgtcccccattaagctgatggag
aacccgctgggtgcgttcattaaacgtgagagcgatgaggtcacttcctgctgtgctgcg
gtgaaacaggaagtggagtcttcgttgtctgagacgggcggtgaggctcaaaatgtgaag
gatgaagttcaggtgaaaatggagggagaaacgagtgcaatttcctaa
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integrated database retrieval system
