Oncorhynchus mykiss (rainbow trout): 110493861
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Entry
110493861 CDS
T07259
Symbol
chd6
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
omy03036
]
110493861 (chd6)
Chromosome and associated proteins [BR:
omy03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
110493861 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
DUF3437
MUN
Motif
Other DBs
NCBI-GeneID:
110493861
NCBI-ProteinID:
XP_021424058
Ensembl:
ENSOMYG00000021012
LinkDB
All DBs
Position
17:37406926..37514061
Genome browser
AA seq
3116 aa
AA seq
DB search
MAFCVLGNKCGGKTQCSAADGLTDAATVKRNMKIQNKDKQMSTIHLLKHTPATAASTATD
QNAQTPFPSGPLGSKDQIRVLGGGQINHCMSHAKHPRMGEAGTSSGSLSPCAPSSPLSSE
EDDGGGGRRAKKKKRKKKDKKGEPGAAWQHKGSEKDNKPKKKRQQKEGKELLPCKSKAPK
KLEVKVKEVKSPKETPKEVKRGRKPKVQAPPLAKPPAECKSAPSPPRQRGRKPREQVLQG
PVPVEKKKKGKRKSVAVLQEAGESDDAASLSTLVVGGEESIDPLDNTKRRSGRQVKRRKY
NEDLDFKVVDDDGETIAVLGTGRIPALNAATLAWQAEEPPEDEANIIEKILSVRTAKKEA
SPEETPEESEEFYVKYRNFSYLHCKWATLEDLEKDPRIHQKIKRFRTKQAQMKHIFVEPD
EDLFNPDYIEVDRILEVAITTDTETGEEVTHYLVKWCSLSYEEATWELQEDVDPGKIREF
EEIKRIPEYKFVERPQPDKWQKLDKSKDYRNGNQLREYQLEGMNWLLFNWYNRKNCILAD
EMGLGKTIQSITFLFEMFSMGLRGPFLIIAPLSTITNWEREFRTWTEINVIVYHGSQISR
QMIHQYEMYHKDQQGNIVSGGYKFHGVITTFEMIMADCPELKKIHWRCVVIDEAHRLKNR
NCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPLQFPSESLFLEEFGDLKTEE
QVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNMQKKYYRAILEKNFTFLAKGA
NQHNMPNLINTMMELRKCCNHPYLIKGAEEKILDSFRKTHSPDAWDFNLQAMIQAAGKLV
LIDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFC
KVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR
LITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGMQQMTKIEVEDLLRKGAYGALMD
EEDEGSKFCEEDIDQILQRRTQTITIETEGKGSTFAKASFVSSGNRTDISLDDPNFWQKW
AKIAELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEERPCRTRRLS
ERNRHYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWQLAECDIEVLCRSLLVYCVRHYK
GDDKIKSFIWDLITPAKDGHKQDLQNHSAGLSAPVPRGRKGKKLKNQLSVPEMKHADWLV
NCNPEVVLHDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGEAAAQFLEGIPASKLEVALP
DIDYIEIPAGWWDAEADKSLLIGVHKHGYERYNAMRADPELCFLERVGMPDVTALSAEQS
GGEVMADLTDSNCKSDDVKDDPESKQEEGVERVDNKDETSSSNDAMDKHDIVVQDIGHRV
QEGFGQEELGQEGMELKGRPLWPAGPNLTARLRRLITAYQRFMRREPLRHDFLLPGASPG
PMSWQLGEELRHCTATAAKPDPLFLEWQRRWVMMSEQSRWTRREQADFYRTVSSFGVVYD
PEKKTFDWSQFRSFARLERKTDESLERYFSSFVSMCRTACRLPPRKDEGNYSTGGRAREL
ALKGPLDHNLFVEPITEERAARTLYRIELLRKVREQVLRHLLLGPRLQLCRPSLYLPVWW
ECGKHDRDLLIGAARHGLSRTDYYILNDPQLSFLEAHRNYVQKENHKGYHPGVHHAGMTP
SPHHHPCCLYETGLGQCHSPQPPEYHHPATPSSSSSIHAHSHPHIHVHGHPPEIVGTDPG
GSLGMVSGPRESFLDCPPLDESLELASLQQEGLASDSLHCKSAKEAFNGFPFNSAQGGQS
MLNSYGVQGELNGEQSTEMDPIISGKLRSDVLVGEQGSSEETGLMAPSLELDQELQAPWE
STDHAGAADIFNDADPILGAPALETEFLDPEEQPEDGGREDRVGGVLDDCLGIPPSQSDP
GEPLPSSFMLFKDIGVSEEEPAEEHTDLSASCPSPYVPPPPLSLSHMTLYPHHQGDAEEP
EEKLSNSDAVAHMPSSKEREGEDDVAFEFDKEMSVDSLYLVGPEQGLEASGISCEDSHQE
EPFEGACDGTGMGSPVESFEAALEGPREETLERDMALGPGEEGLLEGQFEEPLEMSAMDP
QEEEPVEGPLEDSCKDPAPEEPFEGPLEECYDVEPEGASEGPAEAESTFSEHTLPTVDAT
DSLPPSPSVPTSQPEPQIKLEFPLDPESSESKSDILEPDSTVFTPKLEQTKGLLEVKDEI
EERPQKRGETPASVVDSYVEVARFAAPMSMCEMPDSLQDAREPTIAQLLQEKALYSFSEW
PKDRVIINRLDSICHAILKGKWPSSSQQYDSPSSLANTCVPNSVHQRAGFISTRVQPSQN
LNFNIPAPSVTRLPKYKQRGAGECSTGGWRLTSLPLLQERLVAPPYLPELKRGRRSFEYE
SVVLSKQCHSGEKMPLTVPHRGGALLLNGWQEAAMDLSKAGDLGIGGEVAATVDHMSHQV
HPSSHKLPAMGAMQSVIQSAMQGSVGVDMAGILQAGLIHPVTGQIVNGNLRRDDAFMRRR
RGRRRNVEAVDMGFVKSRGMHVPEQQGRVEVISHSAVSSTSSPLECPPGPSTPTQPEVVA
IDREAANKGLMEWLRQNPNYNMELPTFVPSPGAAMLHSFVERPKQRRHRCKDPTKLDVNS
LTGEERVPVVHRSTGRRLGGAMAPAIKELSRWLDANTEYYVAPDWADVVKHSGFLPEGKY
TRILTEPVCRDQGPRRRGRRPRSEMPKPLLSESPMGPLFMNGSLIGSMDLVSLQNLRNVQ
GIPLTGLMGFPHGFAVSAGEDAKNGLSMLPMMLHGIHGSPHMFSVQGLMGQPPTSSAPTS
SATAVSTTTASSAASSPSRGPSQASSSTQADGSGMQSDGERKREDKQSTEEKQLGAIGSH
SIAAITTAAASSSSGVSSSSGSHLAFNPFLVPGLSHGLLYPHMFLPHGGIMALPGMPPTE
SSGSPKRKKKRTREEGVVEEASSHSHLQTDSGPPKTPSDGQTGESTVDQAGPEAREHQKE
DNVQEEVTGHDSHASPENPEKSIEEERETKENRVMEEEKLPGDEEEREPRGAQDSQ
NT seq
9351 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttgtgtccttggaaataaatgcgggggtaaaacccagtgttcggcagctgat
ggcctgactgatgcagcgacggtgaagagaaacatgaagatacaaaataaggacaaacag
atgtctaccatccacttactaaagcacactccagctacagcagcctctactgccactgac
caaaatgcacaaactccatttcccagcggacctttaggctccaaggaccagatcagggtc
ctaggaggcgggcagatcaatcactgcatgtcccacgccaagcaccccaggatgggcgag
gcgggcactagttcaggcagcctcagcccctgcgccccctcgtcacccctcagtagcgag
gaggacgatggaggaggcgggcggcgggcgaagaagaagaaacgaaagaaaaaagacaaa
aagggcgagcctggtgccgcctggcagcacaagggctcggagaaggacaacaaaccaaag
aaaaagaggcagcagaaagaagggaaggagctgctgccatgcaagtctaaggcgcccaag
aagttggaggtcaaggtgaaggaggtgaagtcgccgaaagagacaccaaaagaggtgaag
agagggaggaaacccaaggtgcaggccccgcccctggccaagccccctgcagaatgcaag
agcgccccatctcctcccaggcagaggggccgcaaacccagagagcaagtcctacaaggg
ccggtaccagtggagaagaagaaaaagggcaagaggaaaagcgtggctgtcctccaggag
gctggagagagcgacgacgcggcctccctgtccacgctggtcgtggggggagaggagagc
atcgacccccttgacaacactaagcgtcgctcagggcgacaggtgaagcgcagaaagtac
aacgaggacctggactttaaggtggtagatgatgacggggagaccatcgccgtgctgggg
acaggccgtatccctgccctcaacgctgccactctcgcctggcaggctgaggagccccct
gaagatgaggcaaacatcattgagaaaatcctgtcggttcgtactgcgaagaaagaggca
tcccctgaggagacacctgaggagtcagaggagttctatgtcaagtacagaaatttctcc
tacctccattgtaagtgggcaaccttagaggatttggagaaggaccctcgcatacaccaa
aaaatcaagcgcttcaggactaagcaggcccaaatgaagcacatatttgttgagcctgat
gaagacctctttaaccctgactacatagaggtggatcgaattctggaggtggccatcact
acagacacagagacaggagaggaggtgacacactacctagtgaaatggtgctccctgtcc
tatgaggaggctacatgggagcttcaagaggatgtggacccggggaagattcgggagttc
gaggagatcaagaggatccctgaatacaaatttgtggagagaccgcagccagacaagtgg
cagaagctggacaagtccaaagactaccgaaatgggaatcagctgagagagtaccagctg
gaaggcatgaactggctgctcttcaactggtacaacaggaagaactgcatcctggctgac
gagatgggcctggggaagaccatccagtccatcaccttcctctttgagatgttttccatg
ggcctgcgggggcccttcctcatcatcgcccccctctccaccatcaccaattgggagagg
gagttccgtacctggacggagatcaatgtcatcgtctaccacggcagccagatcagccgc
cagatgatccaccagtacgagatgtaccacaaggaccagcagggaaatatagtgtcgggc
gggtacaagttccacggggtgatcaccacctttgagatgatcatggccgactgtccagag
ctgaagaagatccactggcgctgcgtggtcatcgacgaagcccaccgcctcaagaaccgc
aactgtaaactcctggagggcctcaagctcatgaacctggaacacaaagtcctcctgacg
ggtacccctctgcagaactcggtggaggagctcttcagtcttctcaacttcctggagccc
ctacagttcccctctgagagcctcttcctagaggagtttggagatctgaagactgaggaa
caggtgaagaagctgcaggccatcctgaagcccatgatgctgcggcggctgaaggacgac
gtggagaagaacctggcacccaaggaggagaccatcattgaggtggagctcaccaacatg
cagaagaagtactaccgtgccatccttgagaagaacttcaccttcctggccaagggggcc
aaccagcataacatgcccaatctcatcaacaccatgatggagctgcgcaagtgctgcaac
cacccctacctgatcaaaggtgcggaggagaagatcctggatagcttcaggaaaacacac
agccccgatgcctgggacttcaacctccaggccatgatccaggcggcggggaagctggtg
ctcatcgacaaactgctgcctaagcttattgctggcggccacaaggtgctggtcttctcc
cagatggtgcgctgcttggatatcctggaggactacctcatccagaggaggtacacctat
gagcgcatcgatggcagagtgcgggggaacctgcgccaggctgcgattgacaggttctgt
aaggtggactcagaccgctttgtgttcctgctgtgtactcgtgctgggggcctaggcatc
aacctgaccgctgcagacacctgcatcatcttcgactcggattggaacccccagaatgac
ctacaggcccaagctcgctgccaccgcatcggccagagtaaagcagtgaaggtgtataga
ctgatcactaggaactcctatgagagggagatgtttgacaaagccagtctgaagctgggt
ctagacaaggccgtgctgcaggacatcaatcgaaagggcagcctcaatgggatgcagcag
atgaccaagattgaggtggaggacctgctgaggaagggggcatatggagcgctgatggac
gaggaggacgagggctccaagttctgcgaggaggacatcgaccagatcctgcagcgccgt
acacaaaccatcaccattgagacagagggcaagggctccaccttcgccaaggccagcttt
gtgtcttctggaaacagaactgatatttccctggacgatcccaacttctggcagaaatgg
gccaaaatagcagagctggagattgattccaaagcagagaaggagagcctggtgattgac
acgcctcgtgtgaggaagcagacacgccactacaactcgttcgaggatgacgagctgatg
gagttctcagagctggacagcgactcagaagagaggccctgtcgcacccgccgcctcagc
gagaggaacagacactacctccgcgctgagtgcttccgcgtcgagaagaacctgctcata
ttcggctggggtcgctggaaggacatcctgacccacgggcgcttcaagtggcaactggcc
gaatgtgacattgaggtgctgtgccggtcgctgctggtctactgcgtgcgccactacaag
ggcgacgacaagatcaagagctttatctgggacctcatcacacccgccaaggatggccat
aaacaggacttgcagaaccactctgcaggtctgtcggccccagtgcccaggggacgcaag
ggtaagaaattaaagaaccagctgagtgtgcctgagatgaagcatgcagactggctggtc
aactgcaacccagaggtggtgctgcatgacgacagctacaagaaacacctcaaacagcac
tgcaacaaggtacttctgagggtgaggatgctgtactacctgaaggcagaggtcctggga
gaggctgctgcccagttcctggagggtattcctgccagtaaactggaggtggcactgcct
gacatcgactacatcgagatcccagcaggctggtgggatgcagaggcagataagtctctc
ctcataggggtacacaaacacgggtacgagcggtacaacgccatgcgggccgacccagag
ctgtgtttcttggagagggtgggcatgcctgatgtcacagcgctctcagccgagcagagt
ggaggagaggtgatggctgacctcactgacagtaattgcaaaagtgatgacgtgaaagac
gatcctgaaagcaagcaagaggagggagtggaaagggttgataataaggatgaaaccagc
tccagcaatgatgcaatggacaagcatgacattgttgttcaagacataggacacagggtc
caggagggctttggccaggaagaattgggccaggagggcatggagctgaagggtcgccct
ctgtggcccgccggccctaatcttactgccaggctgcgtcgcctcatcacagcttaccag
cgcttcatgcggcgcgagcccctgcgtcatgacttcttgctgccaggggcaagcccggga
ccgatgtcctggcaactgggggaggagcttaggcactgcacggcaaccgctgccaaacct
gaccctctcttcctggagtggcagagaaggtgggtgatgatgtcagagcaaagcaggtgg
acccggcgagagcaagcagatttctaccgcaccgtgtcgtcgttcggcgtggtgtacgac
ccggagaagaaaacctttgactggagtcagttccgctccttcgcccggctggagaggaaa
acggacgagagcctggagagatacttcagcagctttgtgtccatgtgccgcactgcctgc
agattgccccccaggaaggacgaaggtaactactccacaggaggcagagcaagagagctt
gcccttaaagggcctctggaccacaatctgtttgtagagcccatcacggaggagcgagca
gcacgcactctctaccgcatcgaactgctgcgcaaggtcagagagcaggtgctgcgccac
ctgctgctgggcccacggctgcaactgtgtcggcccagcctttacctgcccgtgtggtgg
gagtgtggcaaacacgaccgcgacctcctgattggggcagcccgccacggtcttagccgc
accgactactacatcctcaacgacccgcaactctctttcctggaggcccaccgcaactat
gtccagaaggagaatcacaagggctaccatcctggggtgcaccacgcaggcatgaccccc
tcgccccaccaccacccctgctgcctgtacgaaacgggcctcggccaatgccactctccc
cagccgccggagtaccaccacccagccaccccctcctcctcctcgtcgatccatgcccat
tctcacccgcacatccacgtccatggtcacccgccagagatagtgggcacagatcccggg
ggcagcctaggtatggtgtctgggcccagggagagcttcctggactgcccccctctggat
gagtccttagaattggcctcactgcagcaagagggcctggcctcagattccctccattgc
aagtctgccaaggaggccttcaacgggttccccttcaactcagcgcagggtggccagagc
atgctcaactcgtatggtgtgcagggggagctgaatggtgagcagtcgaccgaaatggac
cctataatctcgggcaagctgcgcagcgacgtgttggtgggggagcagggttcctctgag
gagacgggcctcatggcgccctcactggagctggaccaggagctgcaagcgccctgggag
agcacggaccacgccggcgccgcagacattttcaacgacgctgaccctatcctgggggcg
cccgcccttgagacggagttcctggaccccgaagagcagccggaagatgggggaagggag
gacagagtagggggagtgcttgatgactgcctgggtatccccccctcccagagcgaccca
ggggaaccgctaccctccagttttatgctgttcaaggacatcggcgtgagcgaggaggag
cctgctgaggagcacaccgacctctccgcaagctgcccttcaccctacgtcccccctccg
cccctgtcgctgtcccatatgaccttgtacccccaccaccagggtgatgccgaggagcca
gaggagaagctgagcaactcggacgccgttgcccacatgcccagctccaaggagagagag
ggagaggatgatgtggcctttgagtttgacaaagagatgtctgtggacagtctgtatctg
gtggggccggagcagggcctggaagcatcaggtatatcatgtgaagactctcaccaagag
gagcccttcgagggtgcctgcgatgggacgggaatgggatctccagtagagtcatttgag
gctgctctagaggggccaagggaagagactttagaaagggacatggccttagggccaggg
gaggaggggcttctagaagggcagtttgaagaacccttggagatgtcagccatggatccc
caggaggaggaaccagtggaggggcctctggaagactcttgtaaagacccagcaccagaa
gaacctttcgaagggccattggaggagtgttacgatgtagaaccagaaggggcctccgag
gggcctgccgaagcagagagcactttcagcgaacacacactacccactgttgatgcaaca
gactctctgcccccgtccccctcagtccccacgtcccagcctgagccacagatcaaactg
gagttccctctggacccagagagctctgagagcaagtcggacatcctggagcctgacagc
actgtcttcacgcccaaactggagcagacaaaggggctgctggaagtgaaggacgagatc
gaggagaggccccaaaaaaggggggaaactccagcctccgtggtggacagctatgtagag
gtggcacggtttgcagcccccatgtccatgtgtgagatgcctgacagtctgcaggacgcg
agggagcctaccatcgcccaactgctgcaggagaaagccctctactccttctctgagtgg
ccaaaggatcgggtgatcatcaaccgcctggacagtatatgtcacgccatcttgaagggg
aagtggccctcgtccagccagcagtatgactctcccagctctctggcaaacacctgtgtg
cccaacagtgtgcaccagagggctggcttcatctcaaccagggtacagccatcccagaac
cttaacttcaacatcccagccccttctgtcacccgcctgcccaagtacaagcaaagaggt
gccggagaatgcagcacaggaggctggaggttgacatccttgcctctcttgcaggagagg
ctggtggcgccgccctatctgcccgaattaaagcggggtaggcggtcgtttgagtacgag
agcgtggtgctcagcaagcagtgccactcaggggagaagatgcccctaacggtgccgcac
cgaggcggggcgctgctgctcaacggctggcaggaggcggccatggacctctccaaggcc
ggggatctgggcattgggggcgaagtggcagccactgtagaccacatgagccaccaggtc
caccctagttcccacaaactgcctgccatgggcgccatgcagagtgtcattcagagtgcc
atgcagggctcggtgggagtagacatggccgggatcctgcaggcaggtctcatccacccc
gtcaccggccaaatcgtcaatggcaacctgaggcgcgacgatgccttcatgcgccgaagg
cgaggcagacggagaaacgtggaggctgttgacatggggttcgtcaagagcagaggaatg
cacgtgccggaacaacagggtagggtagaagtcatcagccattctgcggtgtcgtccacc
tcctccccactggagtgccccccgggaccctccacacccacccagccagaggtggtggcc
atcgacagagaggctgccaacaagggcctgatggaatggctgcggcagaatcctaactac
aacatggaactgcccacttttgtaccgtctcctggcgcagcgatgttgcacagctttgtg
gagcggcccaaacagcggagacatcgctgcaaagaccccaccaagctggacgtcaactcc
ctaacaggggaggagagggtgcccgtggtccacagaagcactggccgcaggcttgggggt
gctatggctccagcaatcaaggagctctcccgatggctggatgcgaatactgagtactac
gtggcacccgactgggcagatgttgtgaaacactctggctttcttcccgagggaaagtac
acgcgcatactcacagagcccgtgtgtcgtgaccaagggccccgccgccggggccgtcgt
cctcgcagcgagatgcccaagcccctcctctcggagtcacccatgggcccactcttcatg
aacggcagcctgatcggcagcatggacttggtcagcctccagaacctccgcaatgtccag
ggcatcccactcacgggcctgatgggattcccccatggcttcgccgtgtccgctggtgaa
gatgccaagaacggcctgagcatgcttcccatgatgctccacggcatacatggctccccc
cacatgttcagtgttcaggggctgatggggcagccgcccacaagctccgctcccacctcc
tcagcgactgcagttagcaccactacggcttcctccgcggccagtagcccctcacgaggc
cccagccaggcgtcttcgagcacacaggcagatggctccggcatgcagtctgacggagag
agaaagagggaggacaagcagtcgacagaggaaaagcaactaggtgcgataggcagccac
agcatcgcagccatcaccactgcggcggccagcagcagcagtggcgtcagcagtagcagt
ggcagccacctggccttcaaccctttccttgttccagggttgtcccatggactgctgtac
cctcacatgttcctcccacacgggggcatcatggcactgccaggcatgccgcccacagag
tcctccggcagccctaagaggaagaagaaaagaacaagggaggaaggggtggtggaggag
gcaagcagccacagccacttacagacagacagtgggcctccgaaaacacccagcgatggt
cagactggggagagcacggttgaccaggccgggccggaggctagggagcatcagaaggag
gacaacgttcaggaggaggtcacgggacacgactcccatgcttctccagagaacccagag
aagagcattgaagaggagagagaaacaaaggagaatagagtgatggaggaggaaaaactg
cctggagatgaggaggagagagagccaaggggggcacaggattcacaatag
DBGET
integrated database retrieval system
