Oncorhynchus mykiss (rainbow trout): 110501261
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Entry
110501261 CDS
T07259
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
omy03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110501261 (upf3a)
03015 mRNA surveillance pathway
110501261 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110501261 (upf3a)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110501261 (upf3a)
mRNA cycle factors
P-body specific factors
110501261 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
Motif
Other DBs
NCBI-GeneID:
110501261
NCBI-ProteinID:
XP_021434317
Ensembl:
ENSOMYG00000035517
LinkDB
All DBs
Position
22:3888821..3918479
Genome browser
AA seq
549 aa
AA seq
DB search
MNKVFSNRPFFSCKTYVNNLREWCVITEKIAHRINTAAPALAELFSLELSRGENDFHRRG
RNMRSETDQMTGGREESVVEIQFRDIPRGQDAVSVNSKQKEEKKEVFTKVVIRRLPPNLS
KDQLEEQLSPLPSYDYFEFFPADQSLYPHLFSRVYINFRNPEDILLFRDRFDGYVFIDNK
GQEYPAVVEFAPFQKVSKKKLKKKDSKAGSIEEDPEYRRFLENYSCDEEKSMANPETLLG
EIEAKTKKLIAKRTTPLLEYIKNKKLEKHRIREEKREERRRRELEKKRQREEEKRKRREE
ERRKRKEADKQKKLSEKEIKIKLLKKSDWDDDVDSDRLKDKGDSGDTERAKWDKPSGHMK
SKEIKDPGQMESDKEQREHGRRQRDKDHRGRDEERKRQRHHYEFDKSMRCKEDTKWGKGY
CQDRAKKDGQYHSSYSYDTCDKVGKEVREDIGGSRKDRVRNKVSDKSVLAYQDRRTSQSE
GPHQIRGALPNKDRPAMQLYQPGAHNRKRVSSAMKGYELPMNRSPDHAAADRCYEAVAME
TSSEKSPDE
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaggtgttttccaataggccttttttttcatgcaaaacatacgtaaataatttg
cgtgaatggtgtgtgattaccgagaagatagcgcaccgcataaacacagcagcaccagct
ctagcagagctcttcagcttggaactctcgcgaggggaaaatgacttccacaggagaggg
agaaatatgaggtctgaaacggaccaaatgaccgggggcagggaggaaagtgtcgtcgaa
atacaattcagagatattccgaggggacaggacgccgtctccgtcaactcaaagcagaaa
gaagagaagaaggaggtctttactaaggtagtaataaggcgacttccacccaacctgtcc
aaggaccagctggaagaacagctcagtcctcttccatcctatgactactttgagtttttc
cctgctgatcaaagcctctatccacacctgttctccagagtttacattaacttcagaaac
cccgaagacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaa
ggccaggagtacccagctgtggtagagtttgccccctttcagaaagtctccaagaagaag
ctcaaaaagaaagattccaaagctggaagcattgaagaagacccagagtaccggcggttt
ctggagaactactcctgtgatgaggagaagtccatggctaaccccgaaaccctgctggga
gagatagaggccaagacaaagaaactcatagccaaaagaacaacacctcttctggagtac
atcaagaataagaaacttgagaagcacaggataagagaggagaagagagaggagcgtcga
cgcagggagctggagaagaaacggcagagggaggaggagaagaggaaacggagggaggag
gagagacgcaaacgcaaggaggcagataaacagaagaaactatcggagaaggagatcaag
atcaagctcctgaagaagagtgactgggacgatgatgtggactctgacaggctcaaggac
aaaggagacagtggggacacagagagggccaagtgggacaaacccagtggacacatgaag
tcaaaggaaatcaaggacccgggtcagatggagagcgataaggagcagagggagcacggc
cgcaggcagagagacaaagaccacagaggaagagacgaggagaggaaacgacagcgccac
cactacgagttcgacaagtccatgcggtgcaaggaggataccaagtggggtaaaggctac
tgccaggaccgggcaaagaaagatggccagtaccacagctcctactcctacgacacgtgc
gacaaggtgggcaaggaggtcagagaggacattggcggtagcaggaaggaccgcgtccgg
aacaaggtgagcgacaagtccgtgttagcctatcaggacagaaggacgtcccagtcagag
gggccacaccagatacgaggggctctgccaaacaaggaccggcctgccatgcagctctac
cagccaggcgctcacaatcgcaagcgcgtgagctctgcgatgaaaggttatgagcttccc
atgaaccgctcgccagatcacgcggcggcggaccgctgctacgaggccgtcgccatggaa
acgagctcggaaaagagcccagacgagtag
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integrated database retrieval system
