KEGG   Oncorhynchus mykiss (rainbow trout): 110504515
Entry
110504515         CDS       T07259                                 
Name
(RefSeq) THO complex subunit 3 isoform X1
  KO
K12880  THO complex subunit 3
Organism
omy  Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013  Nucleocytoplasmic transport
omy03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:omy00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110504515
  09122 Translation
   03013 Nucleocytoplasmic transport
    110504515
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:omy03019]
    110504515
   03041 Spliceosome [BR:omy03041]
    110504515
Messenger RNA biogenesis [BR:omy03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     110504515
Spliceosome [BR:omy03041]
 Complex C
  Other components
   EJC/TREX
    110504515
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110504515
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 RMC1_N NBCH_WD40 eIF2A PD40 Peptidase_S9_N Coatomer_WDAD Nup160 DPPIV_N IKI3 Cytochrom_D1 YNCE
Other DBs
NCBI-GeneID: 110504515
NCBI-ProteinID: XP_021438945
Ensembl: ENSOMYG00000036307
LinkDB
Position
31:8153908..8157546
AA seq 322 aa
MASKYYQEMQESFRNNNKSREFPAHSAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDVFVTASGDKTIRIWDVRTTKCTATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDVKSHRSRAEEQFKFEVNEISWINDNNMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWTVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCESPTFTVAWHPKRPLLAYACDDK
EGKYDNNRESGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtccaaatattatcaagagatgcaagagagttttagaaataacaacaaaagcagg
gaattccctgcgcatagtgctaaagtccattcagtagcatggagttgcgacggcaggagg
ttggcatctgggtcttttgataaaacagcaagcgtatttgttttggaaaaagaccgtttg
gtgaaggagaacaactacagaggccacggagacagtgttgatcagttgtgttggcatcct
accaacccagacgtgtttgtcactgcatcgggggacaagaccatacgcatctgggacgtc
agaacaacgaagtgcacggctactgtcaacactaaaggggaaaacatcaacatctgctgg
agtcccgacggccaaacgatagccgttgggaacaaggatgatgtggttaccttcatcgac
gtcaaatcacaccggtcacgagctgaggagcagtttaagtttgaagtcaacgagatctcg
tggattaatgacaacaacatgttctttctcaccaatggaaacgggtgcatcaacatcttg
agttaccccgagctgaagcccatccagtcgatcaacgcccacccctccaactgcatctgc
atcaagtttgaccccacggggaagtactttgccacaggaagtgcagatgccctggtcagt
ctgtggaccgttgaagaactggtctgtgttcgctgtttctccaggttggactggccagtg
agaacattgagtttcagccatgatgggaagatgctggcttcagcctccgaggaccacttc
atagacatagcagaggttgaaacaggagagaagctgtgggaggtccagtgtgagtctcct
acgttcacagtagcctggcatcctaagagaccgctgctggcctacgcatgtgatgacaag
gaagggaagtacgacaacaatagagagtctggcacagtcaaactgtttggattacctaat
gattcctga

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