Oncorhynchus mykiss (rainbow trout): 110508563
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Entry
110508563 CDS
T07259
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03013
Nucleocytoplasmic transport
omy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110508563 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
110508563 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
omy03019
]
110508563 (thoc1)
03041 Spliceosome [BR:
omy03041
]
110508563 (thoc1)
Messenger RNA biogenesis [BR:
omy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
110508563 (thoc1)
Spliceosome [BR:
omy03041
]
Complex C
Other components
EJC/TREX
110508563 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110508563 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Stonustoxin_helical
Motif
Other DBs
NCBI-GeneID:
110508563
NCBI-ProteinID:
XP_021444831
Ensembl:
ENSOMYG00000037233
LinkDB
All DBs
Position
28:complement(12222094..12230902)
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AA seq
657 aa
AA seq
DB search
MSPPILFNFNDAKDTFTAATRSALDNKTSKPLINAFNQITGNETEKKTTLDQALRQVLEE
QIVEKKALVDDFLSLIYLSIDGVTEGICSATTPFLLLGDILDCLPLDQCDKIFSFVEENV
STWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLDNITVFNKNEQESTLGQRPTEEKEDGMEVEEGEMGDEEPGAPAPCSIPIDYNLYRKF
WTLQDYFRNPVQCYEKFSWITFLKYSDETLAVFKSFKLDDMQASKRKLEELRTAGGDHVY
FAKFLTSEKLMDLQLSDSNFRRHILLQYLVLFQYLKGQVKFKSSSCILNDDQCLWMEETT
KLVYQLLKEIPPDGDKFATMVEHVLNTEENWNSWKNEGCPSFVKDRPVDDKPKRPTRKRQ
APEDFLGKGPDRKVFMGNDELTRLWNLNHDNMAACQSESREFMPSLEDFFEEAIEQADPA
NMVENEYKVVHNSNYGWRALRLLSRRSPHFFQPTNQQFKSLADYLESMVIKLAKELPKDL
PSEEIKTGEEDDEDNSDTLLKESNDSPSMQNKLVSNQQMDEIAAKLGAQWKTLAGQLEIK
AAEIREIETDSEDVDMQAKLLLVAWQDREGTQATVESLVTALNAAGFPKIADILNET
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctccgatcttattcaacttcaacgatgcaaaagatacatttactgccgcaacc
agaagtgcgttggacaacaaaaccagcaaacctttgataaacgcattcaaccagatcact
ggaaatgagacagagaagaagaccacccttgaccaagctctaaggcaggtcctggaggag
cagattgtggaaaagaaagcacttgtcgatgacttcttgtctctcatctatctcagcatt
gatggagtcactgaaggtatctgctccgccactactcctttcctacttttgggggatatt
ctggactgtctacctcttgaccagtgtgataagatcttctcctttgttgaagagaatgtc
tccacctggaagtctaactccttctacactgctgggaagaactacctgttaaggatgtgt
aatgatcttttgaggaggttgtccaagtctcagaacaccgtcttctgtgggcggatccag
ctgttcctggctcgtctcttccccctgtcggagaaatcaggtctgaacttgcagagccag
tttaatctcgacaacatcacagtgttcaacaaaaacgagcaggaaagcactctcggtcaa
aggcccacagaggaaaaagaggatgggatggaggtagaggagggggagatgggagatgag
gaacctggtgcacctgcaccttgttccatccccatcgactacaacctatacaggaagttc
tggaccctgcaggactactttagaaaccctgttcagtgttacgaaaagttctcctggatt
actttcctcaagtattcagatgagacgttggcggtgtttaagagcttcaagctggacgac
atgcaggcttcgaagaggaagctggaggagctgaggacagcgggaggagaccacgtctac
ttcgccaagttcctcaccagcgagaagctaatggacctgcagctcagtgacagtaacttc
cgacgacacatcctcctgcagtaccttgtcctgttccagtacctcaagggacaggtcaag
ttcaaaagctccagttgtatcctgaatgatgaccagtgtttgtggatggaggagaccacc
aaactggtgtaccagcttctcaaagagatcccacctgatggagacaagtttgccaccatg
gtcgagcatgtcttaaacacagaggagaactggaactcgtggaaaaatgagggatgtccg
agctttgtgaaggaccgaccagtagatgacaaacccaagagacccacaaggaaaagacaa
gctccagaagatttcctgggtaaaggccctgacaggaaggtcttcatggggaatgatgaa
ctcacgagactttggaatctgaaccatgacaatatggcggcttgtcagtccgagagcagg
gagtttatgccttctctggaggatttctttgaagaggccattgagcaggcagacccagcc
aacatggtggaaaatgaatacaaggtggttcataactctaactatggatggcgagccctg
cgtctgctgtccaggaggagtcctcacttcttccagcctaccaaccagcagttcaagagc
ctggccgactacctagagagcatggtcatcaaactggccaaggagctgccgaaggacctt
ccgtctgaggagataaagaccggggaggaagacgatgaagacaacagtgacaccctactc
aaggagagcaacgacagtccgagcatgcagaacaagctggtgtccaaccagcagatggat
gagatagcagccaagctgggtgcccagtggaagaccctggctggccagctggagataaag
gccgcagagatccgggagattgagacagacagcgaggatgtggacatgcaggccaagctg
ctgctggtggcctggcaggaccgcgaggggacacaagccaccgttgagagcctggttaca
gccctcaacgctgctggcttccccaagatcgcagacatcctcaatgagacatag
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integrated database retrieval system
