Oncorhynchus mykiss (rainbow trout): 110527595
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Entry
110527595 CDS
T07259
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Pathway
omy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110527595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
omy03400
]
110527595
Enzymes [BR:
omy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110527595
DNA repair and recombination proteins [BR:
omy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110527595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
110527595
NCBI-ProteinID:
XP_021464655
Ensembl:
ENSOMYG00000014039
LinkDB
All DBs
Position
7:complement(27703453..27707840)
Genome browser
AA seq
912 aa
AA seq
DB search
MEGTSKSESAAPQSSVAAQVPFLHLCTTLEKIQKTKLRPDKSKFLRDFIDSWRKFHAALH
KDNPTTTDSFYPAMRLIVPSFERERVAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRT
PTTSQGEAGDFALMTYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDLVKKSLLHL
ITQSTALEQKWLIRMILKDMKLGVSKETVLQVFHLDAAELYNVTTDLNKVCRQLHDPFVS
LSEVSIGLFFAFKPMLAAVANMRQVEKQMGNSTFFIETKLDGERIQLHKDGDVYKYFTRN
SFEYTQQFGASPLEGSLTPFIHNVFKPHVVKCILDGEMMAYNPTTDTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNDHKFGNETLKVRHDNLQTVLTPVKGRIHVVPKTEAKTMQEV
VNALNEAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PASILCGTERPEVYIDPCNSVIIQVKAAEIVSSEMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRNKASGKLFSRHLRINDEPEKKKRKLPAAAKPKKAVGVIDHFKSQDLSGVTK
ETDMFEDVEFCVMNGNEAHPKAELEKAVARCGGIVVQNPGPDTYCVIAAVENMRVKNLIS
SDQHDVVWAAWLLECLDRKQVVPWQPRHMIHISPSTKEHFAKEYDCYGDSYFVDTDEQQL
REVFGRIGRVDTLTAQCIAKLEERFSWDDLPTSMFRPFRVYMDRYADIGDPKSIVPATCL
DTRALEFRFHGGTVVQKLEEGVSHVIVVEETRVLALRTLRRLFTKKFKIVRESWVTESIS
AGFLRNDNDYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacctcaaaaagcgaatctgctgctccccagagctctgtcgctgctcaagtt
ccatttcttcacctgtgcactacgcttgaaaaaatacagaagaccaaactccgaccagac
aaatcaaagtttctccgtgacttcatagactcctggaggaaattccatgcggccctccac
aaagacaaccctaccaccacagactctttctacccggccatgcgtctcatagtcccctcg
ttcgaaagggagcgtgtggcctatggcattaaagagagtatgttagccaagctctacata
gacgtcttgggtctccccaagaatggaccggaagccaacaaactgttgaattaccgcacc
cccaccacatctcagggggaggcaggagatttcgctcttatgacctactttgtgttgaag
aaacgctgcacaagccagggaaacctcaccatcagagaagtcaacgactttctggactct
gtggccatcaacaatgctggtaagcagaaggacctggtgaagaagagcctgctgcacctt
atcacccagagcacggcactggagcagaagtggcttatccgcatgatcttgaaggacatg
aagctgggggtcagcaaagagaccgtgctccaggtgttccacttagatgcggccgagctc
tataacgtcaccacagacctaaacaaggtgtgccggcagctccacgacccctttgtgtcc
ctcagcgaagtgtccattggcctgttctttgccttcaaacctatgctggccgccgtggcc
aacatgcgccaggtggagaagcagatgggcaacagcaccttcttcatagagaccaagctg
gatggagagcgcatccagctgcacaaggatggcgacgtctacaagtacttcacacggaac
tccttcgagtacacccagcagtttggtgcatcgccgctagagggctccctgacgcctttc
atccacaatgtcttcaagccccatgtagtcaaatgcatcctggatggggagatgatggcg
tacaaccccactaccgacaccttcatgcaaaaaggaagcaagtttgacatcaagaggcta
gtggatgactccgagctgcagacgtgcttttgcgttttcgatgtacttcttgtgaacgac
cacaagtttggcaacgagacgttgaaggtgcgccacgacaaccttcagactgtcctcact
cctgttaaagggaggatacacgtggtgccgaaaacggaggccaaaactatgcaagaggtg
gtaaacgccctcaacgaagccattgacaacagggaagagggcatcatggtgaaagatccc
tcatccgtctacaagcccgataagcgaggtgagggctggctcaagataaagccggagtac
gttgatggcttgatggatgagctcgacctgttgattgtcggaggctactggggaaaagga
aggcgaggtggcatgatgtctcatttcctcgtcgcggtggccgaagctccgaagcctgga
gagaaaccctccgttttccacacgctctgtcgcatcggttccggctacaccatgaaggag
ctgtatgacttggggttgaagctggccaagcactggaaagtctaccggaagaacgaccct
ccggcctctattctgtgtgggacggagagaccagaagtctacattgacccgtgcaactcg
gtcatcatccaggtgaaggcagcagaaatagtcagtagtgagatgtacaaaaccaactgc
acgctacgcttccccaggatcgagaagatccgggaggacaaagagtggcaccagtgcatg
accctagctgagctcgatcagtttcgcaacaaggcgtccgggaagttgttctcgcgccac
ctccgcatcaatgacgagcctgaaaagaagaagcgcaagttgccggcagcggccaagccc
aagaaagctgtcggcgtcatcgaccacttcaagtcccaggacctatctggcgttaccaag
gagacggacatgttcgaggacgtggagttctgcgttatgaatggcaatgaggcgcacccc
aaggcggagctggagaaagcagtggcccgatgtggcggtattgtagtccagaacccggga
ccggacacctactgtgtgatcgccgctgtggagaacatgcgcgtgaagaacctgatctct
tcagaccagcacgacgtagtgtgggctgcctggctgctggagtgcctagacaggaagcag
gtggtgccatggcaaccgcgtcacatgatacacatttcaccctccaccaaggagcacttt
gccaaggaatacgactgctacggagacagctactttgtggacacggacgagcagcagctg
agggaagtctttggtcggattggtagagtggacactttgacggcacagtgcatcgctaag
ttggaggaacgcttcagctgggatgacctccccactagcatgttcagacctttcagggtc
tacatggacagatacgcagacataggagaccctaaaagcatcgtaccggcaacttgtctg
gacacgcgggctctggaattccgcttccacggagggacagtagtgcagaagcttgaggaa
ggggtctctcatgtcatagtggtggaggaaacaagagtgttggctttaagaaccctcaga
cgactctttaccaaaaagtttaagattgttagagagtcatgggtaacagaatctatcagc
gcagggtttttgcggaatgacaatgactacctagtgtaa
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