Oncorhynchus mykiss (rainbow trout): 110531511
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Entry
110531511 CDS
T07259
Symbol
usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
omy
Oncorhynchus mykiss (rainbow trout)
Brite
KEGG Orthology (KO) [BR:
omy00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
omy01002
]
110531511 (usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
omy04121
]
110531511 (usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
omy04147
]
110531511 (usp13)
Enzymes [BR:
omy01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
110531511 (usp13)
Peptidases and inhibitors [BR:
omy01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
110531511 (usp13)
Ubiquitin system [BR:
omy04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
110531511 (usp13)
Exosome [BR:
omy04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
110531511 (usp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UBA
zf-UBP_var
zf-UBP
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
110531511
NCBI-ProteinID:
XP_036845065
Ensembl:
ENSOMYG00000001059
LinkDB
All DBs
Position
1:8877591..8915400
Genome browser
AA seq
863 aa
AA seq
DB search
MAADLGELLVPYMPTIRVPRAGDRVFKSECAFSYDSPESEGGLYVCMNTFLGFGREHVER
HYRKTGQSVYMLLKRHVKEKATGAAGGAISRRRNGRVFLDLELNRDFNGDEYECEDEAKL
VIFPDHFEIPLPNIEELPALVTIACDAALNAASAYKKQESDSWDEEIQVSKHARSLRQQD
NGVRIPPSGWKCQKCEMRENLWLNLTDGAVLCGKWFFDGAGGNGHALDHYKDTNFPLAVK
LDNITADGADIYSFDEEEAVLDPHISEHLQHFGIDMLQMQQNGTENGHLNTESVRPRVSE
WEVIQESGMKLKEVYGSGFTGIKNLGNSCYLGTTMQVLFSIPEFQRAYVGNLQRIYDYSP
LDPTTDFSTQMAKLGHGLLSGLYSKPPMKSELIEQVMREEYKHQSKGISPKMFKAMVSKG
HPEFSSNRQQDAHEFFLHLINLVERNSAGSENPSDVFRYLVEERVQCCQTQKVCYNQKVD
YLMQLPAPMEAASNREELIAYEAKRREAEENMRAPPEPVRARIPFTACLQAFTEPENVPD
FWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGVDWVPKKLDLSIDVPDFLDLSRLRG
TGLQAGEEELPDLTPPIVLPEDTRDDSMNSSDSPDIDESAAMQLAEMGFPLEACRKAVYY
TGNMGPEMAFNWIIAHMEEPDFAEPLALPSFMEPGPSMASLGLAATPLDNQPPEESIAIL
TSMGFPRRHTVQALKATNNNLERALDWIFTHPEREEEASDDLLDMSDIMEPNDNTFSNAN
TNSHSTLSPDQDASGPRIKDGPGRYELFAFISHMGASTMSGRYVCHIKKEGRWVIFNDHK
VCLSERPPKDLGYIYFYRRLSSC
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagatttaggagagctgcttgtcccttatatgcccaccatcagagttcccaga
gcaggagacagggttttcaagagcgaatgtgccttttcctacgattctcccgagtctgag
ggaggcttgtatgtgtgtatgaacacattcctgggctttggcagagaacatgtggagaga
cattaccgtaaaaccggacagagtgtttacatgctcctcaaacggcatgtcaaagagaaa
gccacaggtgccgcaggaggcgccatctccagaagaagaaatggcagagtgttcctagat
ttagaactgaaccgtgattttaacggggatgagtatgagtgtgaagacgaggccaagctc
gtcatattcccagaccacttcgagatccccttaccaaatattgaggagttgcctgcactg
gtgacaatagcctgcgatgccgcgctcaacgcagcgtcagcctacaaaaagcaggagtct
gactcctgggacgaggagatccaggtgtccaaacacgccaggagtctccgacagcaggac
aacggagtgaggatcccacccagtggttggaaatgtcagaagtgtgagatgagagagaac
ctgtggctgaacctgacggacggagcggtgctttgtgggaagtggttcttcgacggtgct
ggaggaaacggccacgccctggaccactacaaagacaccaacttccctctggcagtcaaa
ctggacaacatcaccgcagatggagcagatatatattcatttgatgaagaagaagcagtc
ctggaccctcacatatccgaacacttgcaacactttggaatagacatgctacagatgcag
cagaatggaacagaaaatggccacctcaacacagagagcgttcggcctcgggtcagcgag
tgggaggtgatccaggagtcgggcatgaagctgaaggaggtgtatggctcaggtttcacg
ggcatcaagaacttgggtaacagctgctacctgggcaccaccatgcaggtccttttcagc
atcccagagttccagagggcgtatgttggaaatctacagaggatctatgactactcacct
cttgaccccaccacggatttcagcacacaaatggcgaaactgggccacggacttctctca
ggcctgtactccaaaccaccaatgaaatccgagctcattgaacaggtgatgagagaagaa
tacaagcaccagtcgaagggcatctctcccaagatgttcaaagccatggtcagcaagggc
caccccgagttctcctccaacagacagcaagacgcacacgagttcttcctgcacctcatc
aacctggtcgagagaaacagtgctggctcagagaaccccagtgatgtcttccgctacttg
gtggaggagcgtgtgcagtgctgccagacgcagaaggtgtgctacaaccagaaggtggac
tacctgatgcagctcccggcccccatggaggctgcctccaacagagaggagctgatagcg
tatgaggccaagcgaagagaggcagaggagaacatgagagcccctccagagcctgtgagg
gcccggatccccttcacagcgtgcctgcaggccttcacagagccagagaacgtccccgac
ttctggagctcagcactgcaggccaagtcagctggagtcaagacttcccgtttcgcctcc
ttcccagagtatctggtagtgcagattaagaaattcacatttggggttgactgggttcca
aagaaattagatctgtccatagacgtaccagacttcctggacctgtctcgactccggggc
acagggctgcaggcaggagaggaagagctccctgacctcacccccccaatcgtcctgcct
gaagacaccagagatgactcaatgaactcctcagattccccagatatagacgagtcggca
gcgatgcagctggcggagatgggcttccctctggaggcctgtcggaaggccgtttactac
acagggaacatgggccctgaaatggccttcaactggatcatagcccacatggaggagcct
gactttgctgagcccctggcccttccttccttcatggagccaggcccctccatggccagc
ctgggcctggcagccacccccctggacaaccagcctccggaggagagcatcgccatcctc
acgtccatgggcttcccccgccgccacacagtccaggccctcaaagccacgaacaacaac
ttggagagggctctggactggatcttcacccacccggagagggaggaggaggctagtgac
gaccttttggacatgtctgacatcatggagcccaacgacaacaccttctccaacgcaaac
acgaacagccactccacgctgtccccagaccaggatgcctcgggcccccggatcaaagac
ggacccggacgttacgagctttttgctttcatcagccacatgggagcgtccactatgtct
ggtcgttatgtatgtcatatcaagaaggaaggaagatgggtgatcttcaatgaccataaa
gtgtgtttgtcagaaaggcctccaaaagacttgggctacatctacttttaccgtcggctg
tctagctgctag
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