Oncorhynchus nerka (sockeye salmon): 115109140
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Entry
115109140 CDS
T07952
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115109140
03015 mRNA surveillance pathway
115109140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115109140
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115109140
5.6.2.5 RNA 5'-3' helicase
115109140
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115109140
mRNA cycle factors
Common to processing body (P body) and stress granule
115109140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
nSTAND3
ATPase
SLFN-g3_helicase
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
115109140
NCBI-ProteinID:
XP_029489620
EnsemblRapid:
ENSONEG00000004012
LinkDB
All DBs
Position
LG25:complement(7056107..7075880)
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AA seq
1125 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEGLHNGGVDDVAKASQLLAELNFEEDEEDTYYIKDLPLHACSYCGIHDPASVVYCNTS
KKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK
ADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQ
QINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKL
KESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGELAPLWKGIGH
VIKVPDTPFVKDYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDE
TSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPP
GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVIC
CTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKK
AAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKG
FDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIIT
PYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLN
DPRRLNVALTRAKYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS
KPRKLVNAINPNSSASAFFLGIEPMSVLQGARFMSTAMYDAREALIPGSAYDRSSAGRPS
NMYFQTHDQIGMIGAGPAHMAAMNMPIPFNLVIPPMPPPGYLAQANGPAAGRGGVLKGKA
GRGGRQRTRGMGNHSGSGQSNGPNSQASQDVSSQPFSQGPLTQGYITMSQPSQMSQPGLS
QPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagttctcaaacgctcaccttcctggacacggaggaa
gcggagctacttggggctgatacccagggctcggagtacgagtttaccgattttaccctc
cccagccagacgcaaactcaaggccaaacccagagtcagctggacaatcaggtgaatggt
cctgatgaagggcttcacaatggaggagtcgatgatgtggccaaggcgagccaactcctt
gctgagttgaacttcgaggaggatgaagaagacacctattacatcaaagacctcccactg
catgcctgcagttactgtggcatccatgatcctgcatctgtggtgtactgcaacacaagc
aagaagtggttctgcaatggacgtggcaatacatctggcagccacatagtgaaccacttg
gtgagagccaaatgcaaagaggtgactctgcacaaagatgggccactgggcgagacggtg
ctggagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatccccgccaag
gccgactcggtggtggtgctgctgtgcaggcagccatgtgccagtcagagcagcctgaag
gacatcaactgggacagctcccagtggcagccactgatccaggaccgctgcttcctgtcc
tggctggtgaagatcccctcagagcaggagcaactccgggcccgccagatcacagcccag
cagatcaacaagctggaggagctctggaaggataatcccacggccactctggaggacctg
gagaagcccggcgtagatgaggagccccagcatgttctgctgcgctatgaggatgcctac
cagtaccagaacatcttcggccccctcgtcaagctggaagctgactatgacaaaaagctt
aaagagtcccagacccaagataatataacagtcaggtgggacctggggctaaataaaaag
cggattgcttatttctccttgcccaagacggattcaggtgacatgcggctgatgcaagga
gatgagatatgtctgcgctacaaaggagagctggccccactctggaagggcatcggccat
gtcatcaaagtcccagacacaccctttgtgaaagactatggagatgagattgctatagaa
ttgcgcagcagtgttggagctcctgtggaaataccccacaacttccaggtggattttgtg
tggaagtccacttcctttgacagaatgcagagtgccctgaagacctttgctgtggacgag
acatccgtgtcaggctacatctaccacaagctgctgggccacgaggtggaggatgtcatc
atcaagtgtcagttgcccaaacgcttcactgcacagggcctgcctgacctcaatcactct
caggtgtatgctgtgaagactgtgctgcagagacccctcagtcttatccaaggccctccc
ggcactgggaaaacggtcacctctgccaccatagtgtaccacctcgccaggcagggcaat
gggcccgtgctggtgtgtgctcccagtaacatcgcagtggaccagctgactgagaagatc
cacatgtctggcctgaaggtggtcaggctgtgtgctaaaagcagagaagccattgactcc
cctgtctccttcctggccctgcacaaccagatccgcaacatggacagtatgccagagctc
cagaagctgcagcagctgaaggatgagaccggggagctgtcgtccgctgacgagaagcgc
taccgggccctgaagcgcaccgctgagagagagctgctcatgaatgcagatgtgatctgc
tgtacctgtgtgggggcaggagacccccgtctggccaagatgcagttccgctccatccta
atcgatgagagcacccaggccaccgagccagagtgcatggtgcccgtggtcctgggtgcc
aagcagctcattctggtgggagaccactgccagctgggcccagtagtgatgtgcaagaag
gcagccaaagcaggcctgtcccagtctttgtttgagcgtctggtggtgctgggcatcagg
cccatccgtctgcaggtgcagtaccgcatgcacccagccctcagtgctttcccctccaac
atcttctacgagggctccctgcagaacggagtcactgctgctgaccgcatcaagaaaggc
tttgacttccagtggccacagccagacaaacccatgttcttctatgtgactcaaggccag
gaggaaatcgctagctctggaacatcctacctgaacagaactgaggcagctaatgtggag
aagatcaccaccaggctgctgaaggctggagccaagcctgaccagataggcatcatcacc
ccctacgagggccagaggtcctacctggtgcagtacatgcagtttagcggctccctccac
accaagctctaccaggaggttgagatcgccagcgtggacgcgttccagggcagggagaaa
gacttcatcatcctgtcctgcgtccgagctaacgagcaccagggcatcggcttcctcaac
gacccgcgccgtctcaatgtggccctcaccagagccaagtatggggtgatcattgtgggc
aaccccaaggccctgtccaagcagcctctgtggaaccacctgctcaactactacaaggag
cagaaggttctggtggagggacccctcaacaacctgcgagagagcttgatgcagttcagc
aagccccgcaagctggtcaacgccattaaccctaacagcagtgcttctgcatttttcctg
ggtattgaacccatgtctgtgctccagggagcccggttcatgagcactgccatgtatgac
gcccgcgaggctctcatccctgggtctgcctacgatcgcagcagcgcagggcgtccatcc
aacatgtacttccaaacccacgaccagatcggcatgattggggccgggccagcccacatg
gcagccatgaacatgcccattccattcaacttggtgatacctcccatgcctccaccaggc
tacctggcccaggctaacggccctgctgcaggccgtggtggggtgctgaagggcaaagcg
ggacgtggcgggcgccagaggacccgcggaatggggaaccacagtggcagtgggcaaagc
aatgggccaaacagccaggccagccaggacgtgtcttcccagcccttctcccaggggcca
ctcacccagggctacatcaccatgagccagccctcacagatgagccaacctggcctctcc
cagcctgaactgtcccaggacagttatctaggcgatgagttcaagtcccagatcgacgtg
gctctgtcgcaggactcgacttaccagggtgaacgtgcataccaacatggtggggtgact
ggactgtcacagtactaa
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integrated database retrieval system
