KEGG   Oncorhynchus nerka (sockeye salmon): 115109437
Entry
115109437         CDS       T07952                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL2-like
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
one  Oncorhynchus nerka (sockeye salmon)
Pathway
one03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:one00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    115109437
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:one01009]
    115109437
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:one03021]
    115109437
Protein phosphatases and associated proteins [BR:one01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     115109437
Transcription machinery [BR:one03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     115109437
    Little elongation complex (LEC)
     115109437
SSDB
Motif
Pfam: ELL Occludin_ELL
Other DBs
NCBI-GeneID: 115109437
NCBI-ProteinID: XP_029490187
EnsemblRapid: ENSONEG00000041773
LinkDB
Position
LG25:22667212..22712256
AA seq 603 aa
MAALRQEHRYGLSCAKINKKAQNKTLFHVKLTDTAIRTLEAYQNLKGSLPNQPAVCFKGS
QGYIKIPAPSPEAPDALRVFSFYLSSDSKDKPQASVDCIHQHVSGEGREHLEGQGSIQDK
ITVCATDDSYQMTRERMSQVEKDIMSRSAIEIKPGSTHGKCVKIQRKQGLSSGMDSSSNK
HSPNNKKSGAPNPVALRPLRDRIIHVLALKPYRKPELLLWLERERATPKDKTDLGAVLDE
VAKLNHKDHSFTLKDEFYRHVQKDWPGYLEEEKPLIHRLLARKLQPLSSSSQLKSFQSNH
SFHKTPADSPSQLSPVKTPSVKRPVPSDLSDYQTPKKQRLLDHSLSLQSPSNGQLGTFGA
RSSSGPGNTSVQTKTEFERTNNHVQGSPNGLYTRQKLGCSSSIPKLEGTEPGLAVPSPKA
PQTEPSICTDQQLANGQHKKKKSKKHKDKDRERLKQDWIENSPDLKQNQENITDNEGAKT
PVTRTSPEELPDFLIKYNTITASEQRQQYKQDFCAEYDEYRALHDQIGTITEMFVQLGSK
INTLSPGTQEYKLMEEQILQKYRKYKKKFPGYREEKKRCEYLHQKLSHIKGLILDYDRTQ
APS
NT seq 1812 nt   +upstreamnt  +downstreamnt
atggcagcgctgagacaggagcatcggtatgggctctcctgtgcaaaaatcaacaagaaa
gctcaaaataaaactctatttcacgtcaagctaaccgataccgccattcgaacgcttgaa
gcctatcagaatctgaagggatccttaccaaatcagccagcagtttgcttcaaggggagc
caggggtatatcaagatccctgccccatccccagaggccccagatgcactccgggtcttc
tccttctacctgtccagtgatagcaaagacaaacctcaggccagcgttgactgcatccac
cagcatgtctcaggggagggcagggagcacctggagggccagggcagtattcaggacaag
atcactgtgtgtgccactgatgactcataccagatgacccgagagcgcatgtctcaggtt
gagaaggacatcatgagcaggtcggccatcgagatcaaaccaggctctacacatggtaaa
tgtgtgaagatccagaggaagcagggcctgtcgtcaggcatggacagcagcagcaacaag
cactcccctaacaacaagaagagcggggcccccaacccagtagccctcaggcccctgaga
gaccgcatcatccacgtcctggccttaaagccctacaggaagcctgagctgctgttgtgg
ctggagagggagagggccactcccaaggacaagactgacctgggagcagtactggatgag
gttgctaaactgaaccacaaagaccacagctttactctgaaggatgagttctacaggcac
gtccaaaaggattggcccggttacctggaggaagagaagccgctcatccataggctcctg
gccaggaaactgcagccactgagcagcagtagccagttgaagagtttccagtcaaaccat
tcattccacaaaacccctgcggattctccgtcacaactcagcccggtcaagactccctct
gtgaaacgccccgtgccctccgacctatctgattatcagacccccaagaagcaaagacta
ttagaccacagtttatctctgcagtctccttccaatggacagcttggtacctttggagcc
cgtagctcatctggtccaggcaacaccagtgtacagaccaaaacagagtttgagagaacc
aacaatcacgtccagggaagccctaatggtctctacacaaggcaaaaattgggttgctcc
tccagtattcccaagctggaggggacagagccaggcctagcagtaccaagccccaaggct
ccacagactgagccctccatctgcactgaccagcagctagccaacggccagcacaaaaag
aagaagtccaagaagcacaaagacaaggacagggagcgcttaaaacaggactggatagag
aacagtcccgacctgaaacagaaccaggaaaacatcactgacaatgagggggctaaaaca
cctgtcactcgtacatcaccggaggagctgcccgactttttaataaagtacaacaccatc
acagcctcagaacagcgacaacagtacaagcaggatttctgtgcagagtacgatgagtat
agggccctgcacgaccagatcggtaccatcactgagatgtttgttcagctgggttccaag
ataaacactctgtcccccggtacacaggaatacaagctcatggaggagcaaatactgcag
aaatacagaaagtataagaaaaagttccctggttaccgggaagagaagaagcgatgcgag
tatctgcatcagaaactttctcacatcaaaggtctgatcctggactatgaccgtacccag
gccccttcataa

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