Oncorhynchus nerka (sockeye salmon): 115110278
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Entry
115110278 CDS
T07952
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
115110278 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
one04054
]
115110278 (dhx58)
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115110278 (dhx58)
Pattern recognition receptors [BR:
one04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
115110278 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
Motif
Other DBs
NCBI-GeneID:
115110278
NCBI-ProteinID:
XP_029491643
EnsemblRapid:
ENSONEG00000039086
LinkDB
All DBs
Position
LG26:complement(11105442..11111393)
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AA seq
678 aa
AA seq
DB search
MADFGLYEYQEEVVQRALRGENIIIWLPTGGGKTRAAVYVAKKHLENNPGAKVAVLVNKV
HLVDQHYNKEFNPYLGRDYSLVSISGDCDQKDFFGCEVKNSDLVICTAQILENALTNQEE
GKHVELSQFTLLIIDECHHTHKEGVYNKIMARYVAQKLKGERRLPQILGLTASPGTGGAK
SIKGAVEHVLQICANLDSVIVSSKVYAPELKKKVPRPRKRFDIVDKRPQDPFGDHLKFMM
QFIHDFMALGPDFPVREFGTQEYEADVVILEKKGVTDRNRLLAQCALHLRQYNDALLIND
TVRMVDAFRVLESYYSTKSSTAMDGTDFFLLGLYQENEVELRKLSGDARFENPKMGKLQN
TLLEQFDQGGNSRGILFSKTRKSICCLYDWVSNNPALQRAGIRAAILTGAGNGINYMTQN
EQKDTIRNFRLGSLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARASDSV
YSVVAQVGSREVRRELLNECLEDLTGRAIGEVQRMEPRQFQMKITDLQTEALLTRQLAEH
LKIKKRSHFNAATVQLSCRGCFLPVALGNDIKVIENAHHVNINPDFERYYKTGGQPALKT
FEDWEPGRVISCAACDKQWGMEMIYKKIALLPILAIENFAMETPEGRKLAKKWKNVEFTV
EEFNFSTYCQNKFPNMLD
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcagactttgggctgtatgagtaccaggaggaggtggttcagagggctctccggggg
gagaacatcatcatctggctgcccaccggaggaggaaagacacgggctgctgtgtatgtg
gccaaaaaacatctggagaataaccccggagctaaggtggctgtgctggtcaacaaggtt
catttggtcgaccaacactacaacaaagagttcaatccctacctgggtcgagactatagc
ctggtgtctatcagtggggactgtgaccagaaggacttctttggctgcgaggtcaagaac
tctgacctggtcatctgtacagcacagatactggagaatgccctgaccaaccaggaggag
ggaaaacatgtcgagctctcacagttcactctgctgatcattgatgagtgccaccacacc
cataaggagggtgtctacaataagatcatggcgcgctacgtggcacagaagctgaaggga
gaaaggcggctgccgcagatcctgggcctcactgcctctcctgggacagggggagccaag
agcatcaaaggagctgtggagcatgtgctgcagatttgtgccaacctggactcagtgata
gtgtcgtctaaagtgtacgcccctgagctgaagaaaaaggtccccagacccaggaaaagg
tttgacatcgttgacaaaagacctcaggacccatttggggatcacctgaagttcatgatg
cagtttatccatgacttcatggccttagggcctgactttcctgtcagggagtttggcacg
caggagtacgaggcagacgtggtgattctggagaagaagggtgtgacagacaggaacaga
ctgctggcccagtgtgctctccacctgcgtcagtacaacgacgccctgctcatcaacgac
actgtgcgcatggtggatgcctttagggtccttgagtcctactatagtaccaagagctcc
accgccatggatggaaccgacttcttcctgcttggactctaccaggaaaacgaggtggag
ctgaggaaactgtcaggcgatgcccggtttgaaaaccctaaaatggggaagcttcagaac
accctgctggagcagtttgaccagggtgggaactccagagggatcctgttctccaagacc
cgtaaaagcatctgctgcttgtatgactgggtgtccaacaacccagcactgcagcgtgct
ggtatcagagcagccattctgactggcgctggcaatggcatcaattacatgacccagaat
gagcagaaggacacaatccgcaacttccgcctgggctccctcaacctcctgatctccacc
agcgtagccgaggagggcctggacatcccagaatgcaacctggtggtgcgctatgggctg
ctgaccaatgagattgcacaacagcaggccagtggccgggctcgggcgagtgacagcgtt
tactctgtggtggcccaggtggggagccgggaggtgcgtcgggaactcctcaatgaatgt
ctggaggacttgactggcagggccatcggcgaagtgcagaggatggagcccaggcagttc
caaatgaagatcactgatctccagacagaagcgttgttgaccagacagttggcagagcac
ttgaagatcaagaagaggagtcatttcaatgctgctacggttcagctctcgtgtcgaggc
tgttttctgcccgtggccttaggcaatgacattaaagtaattgaaaacgcacaccatgtc
aacatcaatcctgactttgagaggtactataagaccggtgggcagcccgcgctgaagact
ttcgaggactgggagccaggccgtgtgatcagctgtgctgcctgtgacaagcaatgggga
atggaaatgatatataagaagattgccctgctgcccattctggccatcgagaactttgcc
atggagactccggagggaagaaaattagccaagaagtggaagaacgttgagtttacagtg
gaggagtttaacttcagcacgtactgtcaaaacaaattccctaacatgttggattga
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integrated database retrieval system
