Oncorhynchus nerka (sockeye salmon): 115122417
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Entry
115122417 CDS
T07952
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03022
Basal transcription factors
one03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115122417 (gtf2h4)
09124 Replication and repair
03420 Nucleotide excision repair
115122417 (gtf2h4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
one03021
]
115122417 (gtf2h4)
03400 DNA repair and recombination proteins [BR:
one03400
]
115122417 (gtf2h4)
Transcription machinery [BR:
one03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115122417 (gtf2h4)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115122417 (gtf2h4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
115122417
NCBI-ProteinID:
XP_029507484
EnsemblRapid:
ENSONEG00000011979
LinkDB
All DBs
Position
Unknown
AA seq
462 aa
AA seq
DB search
MKLRVQLQCKNLHEYLKELSPEILDRLFNHPATCLAVYRELPPLAKNYVMRMLFLDQPLP
QAAVALWVKKDSEKDHDQCVSVLSGLRLWHSQQLQGGLQGNILNPVFKDNLRIALLGGGK
SWADQGDSLGPDRHARDVESLDKYALERWEVVLHFMVGCPSAAVSQDLSQLLIQAGLMRT
EAGDAPCITSAGFQFLLLDTASQLWYFTLQYLNTAQTRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLSAGVSANSSSTAMGATPG
TGDSGFIVVETNYRLYAYTNSELQIALVALFSECLYRFPNVVVAQVTRESVQQAIANGIT
AQQILHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLQFSEGVLYNQFLSQADFEV
LRDRAQGLGCLVWQNVAHRVIVVSPQGHGEVKRFWKRQKSHT
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcgcgttcagttacaatgcaagaacctccatgagtatctgaaagagttgagc
cctgagatcttagaccgcttgttcaatcatccggccacatgtctggctgtctacagagag
ctccccccattggccaagaattatgtaatgcgaatgctgtttctagaccaaccccttcct
caggccgcggtggcgctttgggtgaaaaaagacagtgaaaaggaccatgatcagtgtgtc
tctgtgctgtctggtctcagactatggcacagccagcagctacagggaggcctgcaggga
aacattctgaaccccgtattcaaagacaacctgagaatagcattattaggagggggtaag
tcgtgggcagaccagggtgacagtcttggtcctgacagacatgcccgtgatgtggagagt
ctggataagtatgctttggagcgctgggaggtggttctccacttcatggtgggctgtccc
agtgctgcagtcagccaggacctgtcccagctcctcattcaggctggcctcatgagaact
gaggctggagatgctccctgtatcacctcagctggtttccagttcctcctcctggacaca
gcctctcagctctggtacttcaccctacagtacctcaacacggcacagactcgtggaatg
gacttggtggagattctgtccttcttgttccagctcagtttctcgactctaggcagggac
tactcagtggaggggatgagtgaatctctgctcaccttcctacagcacctgagggagttt
ggcctcgtcttccagaggaagaggaagtctagaaggtactaccccaccaggctggccatc
actctgtctgctggcgtctccgccaattcttcctccaccgctatgggcgctaccccaggg
actggagattcaggtttcatcgtcgtggaaaccaactatcggctctatgcttataccaac
tctgagctgcagatcgctttggtggctctgtttagtgagtgtctctatcgcttccctaac
gtggtggtagcccaggttaccagggagtcagtacagcaagccatcgctaacggcatcacc
gcacaacagattctccactttctaaggaccagagcacatcctgtcatgctcaaacagaac
ccagtgctgccccccactatcacagaccagatcagactatgggagctggagagagatcga
ctacagttttctgagggagtgctgtataaccagttcctctcccaggctgactttgaggtg
ttgcgggacagagctcagggcctgggctgtctggtgtggcagaatgtggctcacagggtg
attgtggtgtcaccgcagggacacggagaagtcaagaggttctggaaacgacagaagagt
cacacttga
DBGET
integrated database retrieval system
