Oncorhynchus nerka (sockeye salmon): 115122503
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Entry
115122503 CDS
T07952
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03250
Viral life cycle - HIV-1
one04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
115122503 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
115122503 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
one03400
]
115122503 (samhd1)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
115122503 (samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
HD
SAM_1
PDEase_I
Motif
Other DBs
NCBI-GeneID:
115122503
NCBI-ProteinID:
XP_029507571
EnsemblRapid:
ENSONEG00000015536
LinkDB
All DBs
Position
Unknown
AA seq
633 aa
AA seq
DB search
MDRRKRSREDLPTADSDHFNTPEERVYAGLSRDEDLRQWSVEDTCRYMRLEGLGIWEEKF
REQQITGVGLRYLTETHLENMGIGPLGTRLQILHCLRKLWQIAAETKVFNDPIHGHVEMH
PLLVRIIDTPQFQRLRHIKQLGGTYFVFPGASHNRFEHSIGVGYLAGSLVQELNERQPEL
FISHRDILCVQIAGLCHDLGHGPFSHMFDGMFIPKVRPESKWNHEEASLAMFDHLVCENA
LEPAMKEHGLVLPDDLVFIKEQIAGPQNTVPLSQGVSQPASEPWPYKGRPEEKSFLYEIV
ANKRNGIDVDKWDYFARDCFHLGIQNNFDYRRFLKFARVCEVDGKKHICTRDKEVGNLYD
MFHTRNCLHRRAYQHKVGNIIETMITEAFIKADPHIQIQGSGGKMFTISTAIDNMEAYTK
LTDHVFEQIMYSSSSELAEAREILQNITCRRLYKCVGQTQAEKRMEVSQEKLLDWAGCVA
RSRPQNDLQNVTLQPGDFVVNIINMDWGMKEKNPIDKVHFYCKNDPTKAYRIRKDQVSKL
LPERFAEQLVRVYCKKTDERTMEAAKKNFVQWCMDMNFSKPQDGDVIAPELTPLKASWAH
NNDSDDNDEEDSQGGRGWAAVNGGQEKAKTRLF
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggataggcgaaagcgctccagagaagatttaccgactgcggacagtgaccatttcaat
accccggaggagagagtttatgccgggctgtcgcgggacgaggacttaaggcagtggagt
gtcgaggacacttgcagatacatgcgtctggaagggctcgggatatgggaggagaaattc
agagagcaacagataacaggagtggggttacgataccttacagagacacatctggagaat
atgggcatagggcctcttggcacacggctgcagattctgcactgcctgaggaagctgtgg
cagattgcagcagagaccaaggtgtttaatgaccccatccatggccatgtagagatgcat
cctctgctggtccgtatcatcgacacccctcagttccagaggctccgccacattaagcag
ctgggaggaacatactttgtcttccctggagcctcccacaaccgcttcgaacactccata
ggggtgggctacctggcaggttcgctggtccaggagttgaatgagagacaaccagagctc
ttcatctctcatagagacatattgtgtgtccagatcgccggtctctgtcacgacctgggt
catggtcctttctcccatatgtttgatgggatgttcatccccaaagtgcgtccagaatct
aagtggaatcacgaggaggcgtccctggccatgtttgaccacctggtgtgtgagaacgcc
ttggagccggcgatgaaggagcatggcctggtccttcctgatgacctggtcttcatcaag
gagcagattgctggaccacagaacactgtccccctcagccagggagtaagtcagccagcc
agtgagccgtggccatataagggccgaccagaggagaagtccttcctctatgagattgtg
gccaacaaaaggaacggcatcgatgtagacaagtgggactacttcgccagggactgcttc
cacctgggtatccaaaataactttgactaccgtcgctttctcaagtttgcccgtgtgtgt
gaggtggacgggaagaagcacatctgcacccgagacaaggaagtgggtaatctgtatgac
atgttccacacacgcaactgcctgcatagaagggcctaccagcacaaggtgggcaacatc
atagagacaatgatcacagaggcctttataaaggcagacccccacatccagatacaaggt
tcagggggaaagatgttcaccatctccacagcaatagacaacatggaggcctacactaaa
ctcacagaccatgtgtttgagcagattatgtactcgtcatcctctgagctggctgaagcc
agagagatcctccaaaacatcacctgcagacgcctctacaagtgtgtgggacagactcag
gctgagaagcgaatggaggtttcacaggaaaagctcctggactgggcaggctgtgtggcg
aggtccaggcctcagaatgaccttcaaaatgttactctgcagccaggggactttgttgtc
aatatcatcaacatggactggggtatgaaggagaagaaccccatcgacaaagtgcacttc
tactgtaagaacgacccaaccaaagcttaccggatccgtaaggaccaggtgtccaagctg
ctgccagaacggtttgctgagcagctggtcagggtctactgtaagaagaccgatgagagg
accatggaggcagctaagaagaactttgtccagtggtgcatggatatgaacttctccaaa
cctcaggatggagatgtgattgcaccagagctcacccctcttaaggcaagctgggcacac
aacaatgacagtgatgataatgatgaagaggatagccagggaggaagaggctgggctgca
gtcaatggtggacaagagaaggcaaagaccagactcttttaa
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integrated database retrieval system
