Oncorhynchus nerka (sockeye salmon): 115129587
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Entry
115129587 CDS
T07952
Name
(RefSeq) regulator of nonsense transcripts 3B-like
KO
K14328
regulator of nonsense transcripts 3
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03013
Nucleocytoplasmic transport
one03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115129587
03015 mRNA surveillance pathway
115129587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
one03019
]
115129587
Messenger RNA biogenesis [BR:
one03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115129587
mRNA cycle factors
P-body specific factors
115129587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
115129587
NCBI-ProteinID:
XP_029515977
EnsemblRapid:
ENSONEG00000003016
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All DBs
Position
LG5:21496754..21500426
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AA seq
448 aa
AA seq
DB search
MKDGRENTRQREKRMEIKCENIEKMEKPKQEKKEVMTKIIIRRLPPSITKEELEEELQPL
PEVDYLEFFSNDSSMYPHVFARAYINFKIQEDIVLFRDRFDGYVFVDNGGQEYPAIVEFA
PFQKIAKRRSKKKDAKSGTIDEDADYKKFLEIYNGDDEKFTSTPEALLEEIEAKTKELVA
KKMTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKFKKGD
KPSEKDKDQAKEVPKIKLLRKPDRGDDVEKLKKPEKDKMKDDRAPGCPDMTKRQNFETRG
DRVSRKADEDGHKDFRERDRNRERDKERERRQKEKERIRHQDEDRRRRRERHDGENSYRK
REEEGKREKEDCVWEKRRCENAGDSASHTDKPKKSEETLREEKAKRDCLRNKDRPAIQLY
QPGARNRGGESHAGERKSERDQEKGVEG
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacggaagggaaaatactcgtcagagggagaaaaggatggagataaaatgcgaa
aacattgaaaaaatggagaagccaaagcaggagaagaaagaagtaatgacgaagatcatt
atccgacgtctgcctccaagcataaccaaggaggaactggaggaggaattgcagccactt
ccagaagtggactacttagaatttttctccaatgacagcagcatgtacccccatgtcttc
gccagagcatacatcaacttcaagattcaggaagatattgtacttttcagagaccggttt
gatggatatgtgttcgttgataatggagggcaggagtatccagccattgttgaatttgct
ccttttcaaaagattgccaaaagaaggagtaagaaaaaggatgctaaaagtggaacaata
gatgaagatgctgattacaagaaattcctggagatttataatggggatgatgaaaagttt
acatccacccctgaggctctactggaggaaatagaggctaaaacaaaggaactagtagct
aagaaaatgactcccctcttggacttcttaaagaacaaacagagaatccgtgaggaaaag
aaagaggaaaggaggagacgagaactcgaacgtaagcgcctgagggacgaggaacgtcgg
aagtggagggaggaggacaggagaaagcgcaaagaagcagagaagttcaagaaaggagac
aaaccttctgagaaggataaagaccaagcgaaggaggtgccaaaaatcaagctcttgaga
aaaccagacagaggagatgatgtggagaagttaaagaaacctgagaaggacaagatgaaa
gacgacagagctccagggtgtcctgatatgacgaaacgccaaaacttcgaaaccaggggg
gacagggtatcacggaaagctgatgaagatggacacaaagatttcagagagcgggacaga
aaccgcgaacgagacaaagagagggagcggcgtcagaaagagaaggagcgcatcagacac
caagacgaggataggcgaaggaggagggaaaggcacgatggagagaactcctacagaaag
cgagaggaagaagggaaaagggagaaagaagattgtgtctgggaaaagagaaggtgcgag
aatgccggggactccgcaagccatactgataagcctaaaaagtcagaagaaaccctgagg
gaggagaaagctaaaagagattgtttaagaaacaaggatcggcctgccattcagctatac
cagccaggtgccaggaaccgaggaggagaatctcatgctggggagcgaaagtcagagcga
gaccaagagaagggagttgaaggataa
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