Oncorhynchus nerka (sockeye salmon): 115130050
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Entry
115130050 CDS
T07952
Name
(RefSeq) lysine-specific demethylase 2A-like
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
115130050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115130050
04121 Ubiquitin system [BR:
one04121
]
115130050
03036 Chromosome and associated proteins [BR:
one03036
]
115130050
Enzymes [BR:
one01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
115130050
Transcription factors [BR:
one03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
115130050
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
SCF complex
Target recognizing subunit (F-box)
115130050
Chromosome and associated proteins [BR:
one03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
115130050
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
115130050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
JHD
F-box-like
JmjC
SR-25
F-box
Cupin_8
LRR_8
Motif
Other DBs
NCBI-GeneID:
115130050
NCBI-ProteinID:
XP_029516688
EnsemblRapid:
ENSONEG00000040075
LinkDB
All DBs
Position
LG6:complement(39067228..39078878)
Genome browser
AA seq
1315 aa
AA seq
DB search
MEDQNPRYSKRLRTGTRRRYQDDGISDDEIEGKRTFDLDEKLQSDRFNSYLVKHMDGKDF
TFEYIQREGLRDPIVFEKKDGLGLEMPDSDFSVSDVKLFVGSRRMVDVMDVTTQKGIEMS
MAQWRRYYETPPSERDKLYNVISLEFSHTKLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNSIIEMQYPKVQKYCLMSVQGCFTDFHVDFGGTSVWYHILRGGKVFWLIPPTPQNLE
LYENWVLSGKQGDIFLGDKAQDCQRIELKQGYTFMIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYNIEDRTRVPAKFRYPFYYEMCWYVLERYLYCLTNTSHLTPDFQKHSLGVG
LTREDSENKLNGHVKNGTEEKKEGDNDKEEKEEESETKVKMEESDDDSFPLPGATKPGVR
VNLTPLELEGLWNLLGKLEELPTHKKCVPAGIRNAPALLHDIRALLEEHCNDDPKLSYTG
KPIVKWPKRPSWYQPPPPSVVYRPRLAMPHKAVVPRPAKPTSISALRRRRVRCKHCAACQ
RKECGECNFCKDMRRFGGPGRMKKGCMMRQCLAPGLPNSAVCALCGAGQGKQECSDESPS
STTLMECSNCAQIAHPSCIKVPGEGRINKDLPSCWECPKCYQGKEGSSSESSSSEDSTAS
TGSLSTSNHAHREGIGDGEAGSGVRKSRRGRPPLTSSLSQRRVPPPSQRLLLQQQQNRKR
AGALELRLRKRIKLERSKILQSKQTLSLERSPKLLCSQGLAHLQRGVSSRLRSPVGRLSR
GRGSFRGSPYRSPTGARLHPHQLSLSLAPAGRGEGNRERGNGRGVRLRGGAAGRGSSSSS
SSTSSSSSSSSSGSDEERENGVRARRNKENRPQRRGRGAAKEDEEEEQSEESNQNGEEEM
DEDGGEGGQAQTEPPVLVVSDLSDELMKGSYLTVTLQPSRAKRDPGAIVPKLEAAVAPRP
APPGQSCIQRKNLARPPLRNHAPDPYAAPSHSDTHTRGSHPDERRMRPGRLERTDSSASS
SSPVPPLRLPLSALQDGGREVANGGSEPGCEREVWVSVFRYLTRAELCVCMAVCKNWHKW
SLDKRLWMRVDLSVSKSISPQALSGIIKRQPVTLDLSWTSISKKQLTWLINRLPGLKDLM
LSGCSWSSISALSSPGCPLLRTLDLRWADGIKDGQIRDLLNPPGCDNRSQLRNMQSFRLA
GLEISDSTLRLVIRHMPLLTRLDLSHCGALTDQSINLLTAVGSSTRNTLTELNLGGCSKL
TDSCLRYLRRLSCLSLLDLRECKSVSRKACEAFISELSVNTLYCLSEDKLIQRIS
NT seq
3948 nt
NT seq
+upstream
nt +downstream
nt
atggaagaccaaaaccctcgttacagcaagcggttgcgtacagggacgcggcggcgctac
caggatgacgggatctcggacgatgagattgaggggaagaggacgtttgacctggatgag
aagctgcagagtgacagattcaactcttacctggttaaacacatggatggaaaagacttc
acattcgagtacatccagagggaggggctgagagaccctatcgtctttgagaaaaaagat
ggcctcggcttagagatgccagactctgatttcagtgtgagtgatgtcaagctgtttgta
ggcagtcggaggatggttgacgttatggatgtgaccactcagaagggcatcgagatgtcc
atggcccaatggcggcggtactacgagaccccgccctcggagcgagataagctctataac
gtcatcagcctggagttcagtcacaccaagctggagaacctggtgaaacgacccgcctcg
gtggatttgatagactgggtggacaacatgtggccaaggcacctaaaggagagacagaga
gactcaaccaactccataatagaaatgcagtatcccaaagtgcagaagtactgtctgatg
agtgttcagggctgcttcacagacttccacgttgactttggcggtacgtcggtctggtac
cacatcctgcgggggggaaaggtgttttggcttatcccgcccacaccccagaacttggag
ctgtatgagaactgggtgttgtcagggaaacagggagacattttcctcggggacaaggcc
caggactgtcagaggatagaactgaagcagggatacaccttcatgatcccctccggctgg
atccatgctgtgtacacccccgaggacacactggtgtttggaggaaacttcctccacagc
ttcaacatccccatgcagctcaacatctacaacattgaggaccgcacacgagtcccggct
aagttccgataccccttctactatgagatgtgctggtacgtgttggaaagatacctctac
tgcctgaccaacacctcccacctcacccccgacttccagaagcactcacttggtgttggt
ctgacccgtgaagactcggagaacaaactcaacggccatgtgaaaaatggcacagaggaa
aagaaagagggagacaatgataaggaagaaaaggaggaggaaagtgagaccaaggtcaaa
atggaagagtctgatgacgattccttcccccttcctggtgccactaagccgggggtgaga
gtaaacctgactcccctggagctggaggggctgtggaacctgctggggaagctggaggag
ctgccgacccacaaaaagtgtgtccccgcaggcatccgtaatgcccccgcactgctccat
gacatacgggctcttctggaggaacactgcaacgatgaccccaagctgtcttataccgga
aagcccattgtcaagtggcccaagaggccctcgtggtaccagccccctcccccctcagtg
gtataccgtcctcgtctcgccatgccccacaaggccgtggtcccgcgccctgccaagccc
acctctatctcggctctgagacgtaggcgcgtgcgctgcaaacactgtgcagcctgccag
aggaaggagtgcggcgaatgcaacttctgcaaagatatgaggaggttcggaggacccggg
cgtatgaagaagggctgcatgatgaggcagtgtctcgctcctggcctgcctaactcagcg
gtgtgtgctctgtgtggagcgggtcaggggaaacaggagtgttcagacgaaagcccctcc
tccacaaccctcatggaatgctccaactgtgctcagatcgcccaccccagctgcatcaag
gttcctggggagggcaggatcaacaaggacctgcccagctgctgggagtgtcccaaatgt
taccagggcaaagaaggctcttcatcggagtcatccagcagtgaggacagcacggcgtct
acaggttctctctctacatcaaatcatgcccaccgagaggggataggagatggggaggca
ggcagtggggtgaggaagagccgacgtggcagaccccccctgacatcctctctgtcccag
cggagagtgccccctccctctcagaggctgttactgcagcaacaacaaaacaggaagaga
gccggagcgctggagcttcgactcaggaagaggatcaaactggagcgcagcaaaatctta
caatcgaagcagacgttgtctctggagcgttctcctaagctcctgtgctcccagggtcta
gcccacctccagagaggggtgtcctctcgcctccgctcccctgttggcagactgtcccgg
ggccgtgggtccttcagaggctccccttaccgctcccctacaggggctcgcctccatccc
caccaactctccctcagcctggcccctgcaggcaggggagaggggaacagggagcgaggg
aatgggagaggagtacggctcagaggaggagcagcagggagaggaagtagcagcagcagc
agcagcaccagcagcagtagtagtagtagtagtagtggtagtgatgaggagagggagaac
ggcgtgcgagccagacggaacaaagagaaccgaccacagagacgaggaagaggagcagcc
aaagaagatgaggaagaggaacagagtgaggagtccaaccaaaacggagaagaagagatg
gatgaagacgggggggaaggaggacaggcacagacggagccaccagtcctcgtagtgtcg
gaccttagcgacgagctcatgaagggctcgtatctcacagtaaccctacagccgtcgagg
gccaaacgtgatccgggggccattgtcccgaaactggaggctgcagtcgccccccgccct
gcccctcccggccagagttgcatccaacgcaagaacctggcccgaccacccctcaggaac
cacgccccagacccctacgctgcaccctcacactcagacacacacacacggggctcccat
ccagacgagaggagaatgaggccaggcagactagagagaacagacagcagcgcttcctcc
tcctctcctgttcctcctctacgcctccctctgtcggctttacaggatggggggagggaa
gtggcgaatggagggagcgagccgggctgtgagagggaggtgtgggtatctgtcttccgt
tatctgactcgtgccgaactctgtgtctgcatggccgtctgcaagaactggcacaaatgg
agcttggataagaggctgtggatgcgggtcgatctgagcgtgtctaaatccatcagtcct
caagctctgtcaggtatcatcaaacgccaaccagtcaccctggacctctcctggacctcc
atctccaagaaacaactcacctggctcatcaaccgcctgcctgggttgaaggatctcatg
ttgtctggctgttcctggtcttcaatttcggctcttagctcgcccggttgccccctcctg
cgcacgctggaccttcgatgggccgacgggatcaaagacggacagatcagggacctgctc
aacccaccaggttgtgataaccgcagtcagctgaggaacatgcagtctttccgtctggcg
gggctggagatcagtgactctactctgaggctggtgatcagacacatgcccctgctgacc
cgtctggacctgtcccactgtggagccctcactgaccagtccatcaacctgctcactgct
gtgggctcctccacacgcaacacactcaccgagctcaacctggggggctgcagtaagctg
acagactcgtgtctgcggtacctccgccggctttcctgcctctccctgctggacctgcgg
gaatgcaagagtgtgtcccgcaaagcctgtgaggccttcatctctgagctgtctgtcaac
accctctactgcctatctgaagacaaactgatccagaggatatcctag
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integrated database retrieval system
