Oncorhynchus nerka (sockeye salmon): 115130177
Help
Entry
115130177 CDS
T07952
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K28076
finTRIM family protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115130177
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115130177
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRIM_CC
PRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
SPRY
zf-C3HC4_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-RING_2
zf-RING_6
zf-RING_5
ANCHR-like_BBOX
U-box
AAA_13
Pch2_N
MAP65_ASE1
AAA_11
CdvA
GST_C_7
UPF0239
Motif
Other DBs
NCBI-GeneID:
115130177
NCBI-ProteinID:
XP_029516898
LinkDB
All DBs
Position
LG6:complement(5540426..5545246)
Genome browser
AA seq
587 aa
AA seq
DB search
MSAAMDSISCSICLDLLKDPVTIPCGHSYCMGCIKDCWNQDDLKGVYSCPQCRQTFTPRP
VLKKSTMLAELVETLKKTGLQAGTPAHHYAGPGDVACDVCTGRKLKAVKSCLVCLASYCE
THLQPHYESPTFKKHKLVKASTQLEEKICSHHDKLVEIYCHTDQQFICYLCTMDKHKGHD
TVSAESERTERQSQLGEKQKETKQRIQKRQKEIQDVRQAVKSLRRSAQAAVGDSERIFTE
LIHSIERKCSEVKELIRAQEKVEVSRAKGLLKQLDQEMAELRRREGELEQLAHTEDNIQF
LQSFQSLCVPPQSEHLLSITVNQHVFFEDVRKSVTELKRQLGKICSGEIAKISVKVTKVH
IVPPSEPRCLPSFGTTQSGLSVGGLASHGNDTTCQKTRPEPKTREEFLEYYCQLTLDPNT
AFNCLCLSEGNRKVTRRYKDQLYPAHSDRFTTYPQVLCGEGLSGACYWEVEWSGDWVDIA
VSYKGISRSGPDEGLFRSSKQAWCLECDASGCSFYHNDKPIVIPVSCSTRVGVYLDHSAG
TLSFYSVSDTMTLLCRVQTTFTQPLYPGFTVSRTVNILKPNKIIIAN
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcagccatggactcaatcagttgttcaatatgtctggatctactgaaggatccg
gtgactattccctgtggacacagctactgtatgggctgtattaaagattgctggaatcag
gatgatctgaagggtgtctatagctgccctcagtgcagacagaccttcaccccaaggcct
gttctgaagaaaagcaccatgctagcagaattggtggagactctgaagaagacaggactc
caagctggtacccctgctcaccattatgctggacctggagatgttgcgtgtgatgtctgc
actgggagaaaactcaaagcggtcaagtcctgtctggtgtgcctggcctcttactgtgag
actcacctccagcctcactatgaatctcctacctttaagaagcacaagctggtcaaagcc
tccacacaactagaggagaagatctgctctcatcatgacaaactggtggagatttactgc
catactgatcagcagtttatctgttatctgtgtacaatggataaacataaaggccatgat
acagtctcagctgaatcagaaaggactgagagacagagtcaactgggagagaaacagaag
gaaaccaaacagagaatccagaagagacagaaagagatacaggatgtgagacaggctgtg
aagtcactcaggcgctctgcacaagcagcagtgggggacagtgagaggatctttaccgag
ctgatccactccattgagagaaagtgctctgaggtgaaagagctgatcagagcccaggag
aaggttgaagtgagtcgagcaaaaggactgctgaagcaactggaccaggagatggctgag
ctgaggaggagagagggcgagttggagcagctcgcacacacagaagacaacattcaattc
ctccagagtttccagtctctctgtgtccctcctcaatctgaacacttactcagcatcact
gtcaaccaacacgtcttctttgaggatgtaaggaaatcagtcactgagctaaaaagacaa
ttaggaaaaatctgctctggggaaattgccaagatctctgtaaaagtgacaaaagtccac
attgttccaccttctgagccccgttgtcttccgtcatttggcacaactcaatctggactg
tcagttggtggattagcatcacatgggaatgacaccacctgtcagaagacgaggcctgaa
cccaagaccagagaggagttcttagaatattactgtcagctcacattggatcccaacacg
gcatttaactgtctgtgtctgtctgaggggaacagaaaggtgacacggcgttataaggac
cagctttatcctgcccattcagacagatttaccacctacccccaggtgttgtgtggagag
ggtctgtctggagcctgctactgggaggtggagtggagcggggactgggttgatatagct
gtctcatataaagggataagcaggagtggacctgacgagggtttgtttagaagcagtaaa
caggcctggtgtttggagtgtgatgcttctggttgctctttctatcacaatgataaaccg
attgtcatacctgtctcctgttccaccagagtaggagtgtacctggaccacagtgcagga
actctgtctttctacagcgtctctgacacaatgaccctcctctgcagagtccaaaccact
ttcactcagcccctctatcctgggttcactgtctctagaactgtgaatatactgaaacca
aacaagattattatagcaaactaa
DBGET
integrated database retrieval system
