Oncorhynchus nerka (sockeye salmon): 115135388
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Entry
115135388 CDS
T07952
Name
(RefSeq) tripartite motif-containing protein 16-like
KO
K12006
tripartite motif-containing protein 16
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
one04121
]
115135388
Ubiquitin system [BR:
one04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
115135388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
zf-C3HC4_4
zf-B_box
SPRY
zf-RING_UBOX
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_5
U-box
zf-RING_6
ALS2CR8
PI3K_P85_iSH2
EzrA
Motif
Other DBs
NCBI-GeneID:
115135388
NCBI-ProteinID:
XP_029525900
EnsemblRapid:
ENSONEG00000001501
LinkDB
All DBs
Position
LG10:27523191..27528921
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AA seq
574 aa
AA seq
DB search
MADPTSSDYFSCPLCVGLLRDPVAIPCGHSFCMDCISGYWNEADYTGIYICPQCKITFTQ
RPVLRPNTMLTKVAEKIKKTGANLNLNLTPPGNTFAGPADVPCDYCSGKKLKAVKSCLNC
LASYCEKHLKPHYESATFKRHKLVDELGNLDRKICPQHQKSLELFCRTDQMCICAICTVS
EHRGHDIVSAEAERSEKQKLLGVAQAEIRQKCQDRVKELEELRTAVDSLKSSARRAMAES
EKMFEDMIRSIERMRSEVTKMIGINEKAAFNQAEGLVERLEQEIDELKKKETGLKQLYST
EDHIHFLQNFNYLCTPTDDGFIPRVSVNPDFSFSAARKAVAEIKDRLEELGREELVKISK
SVNEVPVYTTEKREKSSRVIEVMTVDSPPPPEPKTRSEFLKYFCQLRLDPSTAYKELHLS
ESSRKVIRTRDLQPYSDTPERFDSFAQVLCREALSGGRFYWEIEWSGEFSMGVAYKGISR
KGKGSLCLLGYNDKSWSLLCSDTGYSAWHNRADKAINAPHSPRIGVYLDHSAGVLAFFSI
GNHMTLLHRFETMFVEPLYPGFGVGTSVKICQLK
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcccacgtcttcggattacttcagctgcccactgtgtgtggggctgctgagg
gaccccgtggctatcccctgcggacacagtttctgcatggactgcatcagcggctactgg
aatgaggcagactacacagggatctacatctgcccccagtgtaagatcaccttcacccag
aggcctgtgctcaggcccaacactatgctcaccaaggtggcagagaagatcaagaagact
ggtgccaacctcaacctgaacctcacacccccagggaacacctttgctgggcctgccgac
gtgccctgtgactactgctctggtaagaagctcaaggctgttaagtcctgcttgaactgc
ctggcctcatactgtgagaagcacctgaagccccactatgagtcagccacattcaaaagg
cacaagctggtggacgagctggggaacctggacagaaagatctgcccccagcaccagaag
tccctggagctgttttgccggactgaccagatgtgtatctgtgccatctgtactgtcagc
gaacacaggggacatgacatcgtctcagccgaggcagagaggagtgagaaacagaaactc
ctgggagttgctcaagctgagatcagacagaaatgtcaggacagggtgaaggagttggag
gaactgagaacagcagtggactcactaaagagctcagcccggagggccatggcggagagt
gagaagatgtttgaggatatgatccgctccatcgagagaatgaggtcagaggtgacaaag
atgattggcatcaacgagaaggctgcattcaaccaggctgaggggctggtggagaggctg
gagcaggagatagatgagctgaagaagaaggagacgggactcaaacagctgtacagcact
gaggaccacatccacttcctacagaacttcaactatctgtgtactcccacggatgatggc
tttatccccagagtgtcggtgaacccagacttctcgttcagcgcagccaggaaagccgtg
gcagagatcaaggatcgtctggaggagctgggtagagaggaacttgtgaagatctccaag
tcagtgaacgaggtccctgtttatacgacagaaaagagagagaaaagcagcagagtcata
gaagtcatgacagtggacagccctcctccaccagagcccaagaccagatcagagtttctg
aaatacttctgccagctgagactggaccccagcacagcctacaaggagctacacctgtcg
gagagcagcagaaaggtgatccgaaccagggacctccagccctactctgacaccccggaa
aggtttgacagcttcgcgcaagtgctgtgccgcgaagccctgtctggtggccgcttctac
tgggagatcgagtggagcggggagttctccatgggggtggcctataagggaatcagccgc
aaggggaaaggatcactgtgtctgctgggctataatgataagtcttggagcctgctgtgt
tctgatacagggtactcagcctggcacaacagggcagataaagccatcaatgcgccccat
tcaccgaggataggggtctacctagaccactcggcaggggtcctggccttcttcagtata
ggcaaccacatgactctcctgcacaggttcgaaaccatgtttgtggagcccctctatccc
ggctttggagttggaacctcggtcaagatctgtcaactcaaatga
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