Oncorhynchus nerka (sockeye salmon): 115136252
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Entry
115136252 CDS
T07952
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115136252 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
one03041
]
115136252 (ddx46)
Enzymes [BR:
one01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115136252 (ddx46)
Spliceosome [BR:
one03041
]
Complex A
U2 snRNP components
U2 related factors
115136252 (ddx46)
Complex B
115136252 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
115136252
NCBI-ProteinID:
XP_029527709
EnsemblRapid:
ENSONEG00000020654
LinkDB
All DBs
Position
LG10:complement(68694258..68718617)
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AA seq
1064 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSKSRSPDKRSKKDDGAASRNRDRDRNRRGERSRSRDRRR
SRSRDRKRPRRSRSREKRRSRSRDRNRRSRSRGRRSQSASPSKSRKTEETLSKSKEKDNP
EASAEKKKIKEEQEEVVEDQDFDQNKLEEEMRKRKERVEKWREDQRKKALGNIEEIKREI
EEMKQGKKWSLEDDDDDDEEGTAPEEEPEEGEEGKGPEEKEEKKEEEEEEEEEVTPMEQE
AEDELDTLDAYMEEVKEEVKKFNMGPQSKGNDKKGGVNVSKVVTVCKTKRGPNVHKKKGE
LMENDQDAMEYSSEEEEVDLATALTGYQTKQRKVLEPVDHQKIEYEPYRKDFYVEVPELA
KMSPEEVNVHRLDLEGIAVKGKGCPKPIKSWVQCGTSMKILSALKRHSYEKPTPIQAQAI
PAIMSGRDLIGIAKTGSGKTIAFLLPMYRHIMDQRPLEEAEGPIAVIMTPTRELALQITK
ECKKFSKPLNLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRA
TYVVVDEADRMFDMGFEPQVMRIMDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQV
GGRSVVCSDVEQHVLVIEEDQKFLKLLEILGHYQEKGSVIIFVDKQEHADGLLKDLMKAS
YPCMSLHGGIDQYDRDSVINDFKNGACRLMVATSVAARGLDIKQLILVVNYNCPNHYEDY
VHRAGRTGRAGNKGFAYTFITDEQARYAGDIIKALELSGSPVPKELEQLWLSFKNQRQAE
GKSIKSSSGFSGKGFKFDETEHALANERKKLQKAALGLQDSDDEDGALDIDEQIESMFNS
KKRVKDLSAPGGGPPSAAAVAAAAAGGLANLGAPSAGNIQKLEMAKRLALRINAQKNLGA
EAQDVMQQATNAILRGGTIMAPSVSAKTIAEQLAEKINAKLNYIPVEKLEEERQAAEQAE
TVKRYEEELEINDFPQTARWKVTSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIY
LAIESANELAVTKAKAEITRLIKEELIRLQNSYQPTSKGRYKVL
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcgagtcaaggcattacaggaaacggtcggcatcgaggggtcggtccgggagt
cgatcaaagagccgttccccagacaaacgctccaagaaggatgatggtgctgcctcacga
aaccgagacagggaccgcaacaggcggggagagaggtcacgcagccgtgaccgacgccga
tcaaggtccagagacaggaagcgccccagacgctctaggagtcgggagaagaggcgctcc
aggagccgtgacaggaatagaaggtctagaagccgaggacgcagatctcaatccgcaagc
cccagcaagagcaggaaaactgaagagactctgtctaaaagcaaggaaaaagacaaccct
gaagcctctgcagagaagaagaaaatcaaagaagagcaagaggaggttgttgaggatcaa
gactttgaccagaacaagctggaggaagagatgaggaagaggaaggagcgagtggagaag
tggagggaggaccaaaggaagaaggccctagggaacatcgaggagatcaagagagagatt
gaggagatgaagcagggaaagaagtggagtctggaggatgacgacgatgacgatgaggaa
gggacagctcccgaggaagagcctgaagaaggtgaggagggtaaggggccggaggagaag
gaggaaaagaaagaggaggaggaggaagaggaggaggaggttactcccatggagcaggaa
gcagaggatgagctggataccttagacgcctacatggaggaggtcaaggaggaagtcaag
aagttcaacatgggcccccagtctaaagggaacgacaagaagggtggagtaaacgtatcc
aaagttgtcaccgtatgcaaaactaagaggggaccaaatgtccacaaaaagaagggtgag
ctgatggagaatgaccaggatgcaatggagtactcatcagaggaagaggaagtggatctg
gcgacagccctgactggctaccagaccaaacagaggaaggtgctggagccagtggatcac
cagaagattgagtacgaaccgtaccgcaaggacttctatgtagaggtgccagagctggcc
aagatgtctccagaggaggtgaatgtccacaggctggacctggagggaatcgcagtcaaa
ggaaaaggttgtcccaagcccatcaagtcatgggttcagtgtggcacgtctatgaagatc
ctaagtgcactgaagagacacagctatgagaagcccacccccatccaggctcaggccatt
ccagccatcatgtctgggagagatctcattggcatcgctaagaccggcagtggaaagacc
atcgccttcctccttcccatgtaccgtcacatcatggaccagaggcccctggaggaggct
gagggacccatcgctgtgatcatgactcccaccagagagctggctctgcagatcaccaag
gagtgcaagaagttctccaagcctctgaacctgagggtggtgtgtgtatatggaggcact
gggattagtgaacagattgctgagctgaagaggggagcagagatcattgtgtgcacacca
gggcgaatgattgacatgttaggtgccaacagcggtcgagtcacaaacctgcgacgagcc
acgtacgtggtcgtggacgaggcggatagaatgttcgacatgggctttgagccgcaggtg
atgcgtatcatggacaacgtgcgtccagaccggcagacggtcatgttctccgctacgttc
ccgcgggccatggaggcgctggccaggaggatactgtccaagcccatcgaggttcaggtg
ggaggcaggagcgtggtgtgctctgatgtggagcaacatgtgctggtaattgaggaggac
cagaagttcctgaagctgcttgagatccttggccattaccaggagaagggctcggtcatc
atctttgtggacaaacaggagcatgctgacgggctgctcaaagacctgatgaaggcctcc
tacccctgcatgtctctgcacggaggcattgaccagtacgacagagacagcgtcatcaat
gattttaagaacggggcgtgtcggctaatggtggccacctctgtagcagccaggggtttg
gacatcaagcagttgatcctagtcgtcaactacaactgtcccaaccactacgaggactat
gtccacagggctggacgtaccgggagagccgggaacaaaggctttgcctacaccttcatc
acagatgagcaggcacgctacgccggggacatcatcaaggccctggagctctcagggtcc
cctgtgcccaaggagctggagcagctgtggctgtccttcaaaaaccaacggcaagcggag
ggtaaaagcatcaaaagcagcagtgggttctcggggaagggcttcaagtttgacgagacg
gagcatgccctggctaacgagaggaagaagctgcagaaggccgctctgggtctgcaggac
tctgatgacgaggacggagccctggatattgacgagcagatcgagagcatgttcaactcc
aagaagagggtgaaggatctgtcggctccagggggagggccgcccagcgctgcggccgtt
gcggctgcagcagcagggggcctagccaacctcggtgccccctctgctgggaacatccag
aaactggagatggccaagagactggctctcaggatcaacgcccagaagaacttgggggct
gaggctcaggatgtgatgcaacaggccaccaatgccatcctgagaggaggcaccatcatg
gccccctccgtctcggcgaagaccatcgccgagcagctggctgagaagatcaacgccaag
ctcaactacatccctgtggagaagctggaggaggagaggcaggcagctgaacaggccgag
acggtcaagagatacgaagaggagctggaaatcaatgatttccctcagactgcgaggtgg
aaggtcacgtctaaggaggccctccagaggatcggagaatactctgaggcagccatcacc
atcagaggaacctacttccctccaggcaaagagcccaaagagggagaacgcaagatctac
ctggctattgagagtgcaaatgagctggccgttacgaaggccaaggctgagatcactcgg
ctcatcaaggaggagcttatcagattacaaaactcctaccaacccaccagcaaaggaaga
tacaaggtcttgtag
DBGET
integrated database retrieval system
